Variant report

Variant	rs9748108
Chromosome Location	chr17:38159231-38159232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38152599..38155402-chr17:38158806..38161805,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1042657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10852937	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12938879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2071369	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs2071370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2227324	0.94[EUR][1000 genomes]
rs2227338	0.95[EUR][1000 genomes]
rs2302775	0.86[CHB][hapmap]
rs3816471	0.86[ASN][1000 genomes]
rs3826330	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3859190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3916061	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4795411	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4795417	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795421	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6503532	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8068253	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs921651	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9899955	0.95[EUR][1000 genomes]
rs9900199	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9903987	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9905305	0.87[ASN][1000 genomes]
rs9913632	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38152200-38160600	Weak transcription	Psoas Muscle	Psoas
2	chr17:38152200-38160800	Weak transcription	K562	blood
3	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
4	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:38153600-38160400	Weak transcription	HSMMtube	muscle
7	chr17:38153600-38160600	Weak transcription	Stomach Mucosa	stomach
8	chr17:38153800-38160600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:38154200-38161000	Weak transcription	Lung	lung
13	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:38154400-38160400	Weak transcription	HepG2	liver
15	chr17:38154400-38166200	Weak transcription	Dnd41	blood
16	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:38154600-38160800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr17:38154600-38166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr17:38154600-38166400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:38154600-38170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:38154600-38170200	Weak transcription	Esophagus	oesophagus
22	chr17:38154800-38173600	Weak transcription	Thymus	Thymus
23	chr17:38155000-38160600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr17:38155000-38160600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr17:38155000-38166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:38155000-38166400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr17:38155000-38170000	Weak transcription	HSMM	muscle
28	chr17:38155000-38173600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr17:38155000-38174000	Weak transcription	Fetal Brain Female	brain
30	chr17:38155400-38170200	Weak transcription	Placenta	Placenta
31	chr17:38155600-38164200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr17:38155600-38166600	Weak transcription	Fetal Thymus	thymus
33	chr17:38155600-38169600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr17:38155600-38169800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr17:38155800-38160400	Weak transcription	Fetal Muscle Leg	muscle
36	chr17:38155800-38161000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr17:38155800-38171800	Weak transcription	Spleen	Spleen

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