Variant report

Variant	rs3827086
Chromosome Location	chr20:23357331-23357332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23357022..23358701-chr20:23368809..23370316,2	MCF-7	breast:
2	chr20:23342744..23345940-chr20:23355665..23360192,5	K562	blood:
3	chr20:23341905..23344244-chr20:23356684..23358991,2	K562	blood:

Variant related genes	Relation type
ENSG00000125812	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1076776	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12625164	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17757228	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17757442	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17830281	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1936011	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2277765	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2281428	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2281434	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2295238	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34648279	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3736755	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3746733	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3746737	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3761274	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3761275	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3827085	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55851398	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56094936	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56334525	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132599	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6132600	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6132605	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6132606	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6132609	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6132610	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6132617	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6137901	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6137907	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6137910	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6137913	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137914	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137915	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137917	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6137919	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6137920	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6137927	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6137929	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6137930	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6137931	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6137936	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6137937	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6137938	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6137939	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6137941	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6137945	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6137947	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6137948	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6137950	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6137951	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs761722	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8183135	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:23344800-23362400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr20:23345000-23361800	Strong transcription	Fetal Thymus	thymus
4	chr20:23345000-23362000	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr20:23345000-23362600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:23346600-23363200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr20:23346800-23362600	Weak transcription	Right Atrium	heart
8	chr20:23347200-23362400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr20:23347400-23362000	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr20:23347600-23358600	Strong transcription	Primary T cells from cord blood	blood
11	chr20:23347800-23362000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr20:23347800-23362200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr20:23347800-23362600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr20:23348000-23374200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr20:23348200-23384800	Weak transcription	Stomach Mucosa	stomach
16	chr20:23348400-23358200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr20:23348400-23362000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr20:23348600-23358800	Strong transcription	Primary B cells from peripheral blood	blood
19	chr20:23348600-23362400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr20:23348600-23363000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr20:23348800-23358000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr20:23348800-23358200	Strong transcription	NH-A	brain
23	chr20:23348800-23362000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr20:23348800-23363000	Strong transcription	GM12878-XiMat	blood
25	chr20:23348800-23366400	Strong transcription	Dnd41	blood
26	chr20:23349000-23358800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr20:23349200-23359000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr20:23349200-23359000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr20:23349200-23359200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr20:23349200-23359400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr20:23349200-23360400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr20:23349200-23363000	Strong transcription	Adipose Nuclei	Adipose
33	chr20:23349400-23358000	Strong transcription	Brain Cingulate Gyrus	brain
34	chr20:23349400-23358000	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr20:23349400-23358200	Strong transcription	Primary hematopoietic stem cells	blood
36	chr20:23349400-23358200	Strong transcription	Fetal Brain Female	brain
37	chr20:23349400-23358200	Strong transcription	Fetal Intestine Large	intestine
38	chr20:23349400-23358800	Strong transcription	Left Ventricle	heart
39	chr20:23349400-23359000	Strong transcription	Fetal Muscle Leg	muscle
40	chr20:23349400-23363200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr20:23349600-23357800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr20:23349600-23358000	Strong transcription	K562	blood
43	chr20:23349600-23358200	Strong transcription	NHDF-Ad	bronchial
44	chr20:23349600-23358600	Strong transcription	HSMM	muscle
45	chr20:23349600-23358800	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr20:23349600-23358800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr20:23349600-23358800	Strong transcription	NHLF	lung
48	chr20:23349600-23359000	Strong transcription	Brain Anterior Caudate	brain
49	chr20:23349600-23359000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr20:23349600-23363600	Strong transcription	Liver	Liver

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