Variant report

Variant	rs3827331
Chromosome Location	chr22:31538473-31538474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000138942	Chromatin interaction
ENSG00000264141	Chromatin interaction
ENSG00000185133	Chromatin interaction
ENSG00000253352	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2074734	0.91[ASN][1000 genomes]
rs3761430	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4364102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5749219	0.84[ASN][1000 genomes]
rs5749225	0.83[ASN][1000 genomes]
rs5749230	1.00[EUR][1000 genomes]
rs5749235	1.00[EUR][1000 genomes]
rs5749241	1.00[EUR][1000 genomes]
rs5753485	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5753494	0.81[ASN][1000 genomes]
rs5753502	0.82[ASN][1000 genomes]
rs5753561	1.00[EUR][1000 genomes]
rs5753574	1.00[EUR][1000 genomes]
rs58659480	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31520400-31538800	Weak transcription	Right Atrium	heart
2	chr22:31536200-31540800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr22:31536600-31538800	Weak transcription	Brain Anterior Caudate	brain
4	chr22:31536600-31538800	Weak transcription	Right Ventricle	heart
5	chr22:31536600-31539800	Enhancers	Esophagus	oesophagus
6	chr22:31536600-31540600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr22:31537000-31538800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr22:31537200-31538800	Weak transcription	Brain Hippocampus Middle	brain
9	chr22:31537400-31540000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr22:31538000-31538800	Enhancers	HMEC	breast
11	chr22:31538200-31538600	Flanking Active TSS	NHEK	skin
12	chr22:31538200-31538800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr22:31538200-31540800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr22:31538400-31539200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr22:31538400-31539600	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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