Variant report
| Variant | rs58659480 |
|---|---|
| Chromosome Location | chr22:31769896-31769897 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:31742050..31743658-chr22:31769266..31771167,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000100105 | Chromatin interaction |
| ENSG00000213888 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs12165685 | 0.97[ASN][1000 genomes] |
| rs12169794 | 1.00[EUR][1000 genomes] |
| rs12484646 | 1.00[EUR][1000 genomes] |
| rs12485004 | 1.00[EUR][1000 genomes] |
| rs12485131 | 1.00[EUR][1000 genomes] |
| rs17220418 | 0.84[ASN][1000 genomes] |
| rs17820958 | 0.83[ASN][1000 genomes] |
| rs1859677 | 0.81[ASN][1000 genomes] |
| rs2073861 | 0.81[ASN][1000 genomes] |
| rs2158779 | 0.85[ASN][1000 genomes] |
| rs2240424 | 0.82[ASN][1000 genomes] |
| rs2240427 | 0.87[ASN][1000 genomes] |
| rs2295240 | 1.00[EUR][1000 genomes] |
| rs35208364 | 1.00[EUR][1000 genomes] |
| rs3827331 | 1.00[EUR][1000 genomes] |
| rs4364102 | 1.00[EUR][1000 genomes] |
| rs5749230 | 1.00[EUR][1000 genomes] |
| rs5749235 | 1.00[EUR][1000 genomes] |
| rs5749241 | 1.00[EUR][1000 genomes] |
| rs5749252 | 0.85[ASN][1000 genomes] |
| rs5749255 | 0.86[ASN][1000 genomes] |
| rs5749257 | 0.90[ASN][1000 genomes] |
| rs5749258 | 0.87[ASN][1000 genomes] |
| rs5749262 | 0.97[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5749263 | 0.97[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5753485 | 1.00[EUR][1000 genomes] |
| rs5753554 | 0.80[ASN][1000 genomes] |
| rs5753555 | 0.85[ASN][1000 genomes] |
| rs5753556 | 0.85[ASN][1000 genomes] |
| rs5753561 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs5753566 | 0.87[ASN][1000 genomes] |
| rs5753569 | 0.89[ASN][1000 genomes] |
| rs5753571 | 0.88[ASN][1000 genomes] |
| rs5753572 | 0.97[ASN][1000 genomes] |
| rs5753574 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs58915086 | 1.00[EUR][1000 genomes] |
| rs713619 | 0.82[ASN][1000 genomes] |
| rs9621236 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834176 | chr22:31682426-31864701 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
| 2 | esv1816779 | chr22:31743711-31797094 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
