Variant report

Variant	rs3827656
Chromosome Location	chr7:21037451-21037452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABCB5-1	chr7:21036845-21037627	NONHSAT119439

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12113935	1.00[ASN][1000 genomes]
rs12700247	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13228761	1.00[ASN][1000 genomes]
rs13232210	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17675673	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17675913	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17676127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17676175	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17732288	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17732809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17733498	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34346814	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34369077	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34388702	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34490482	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34562194	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34578613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35289319	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312925	1.00[ASN][1000 genomes]
rs35462998	1.00[ASN][1000 genomes]
rs35563344	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35831036	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36005121	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36070274	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3810893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4281024	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598145	1.00[ASN][1000 genomes]
rs58620271	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461528	1.00[ASN][1000 genomes]
rs6944551	1.00[ASN][1000 genomes]
rs71526346	0.83[EUR][1000 genomes]
rs71526347	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779016	0.84[ASN][1000 genomes]
rs7779289	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21033600-21037800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:21034000-21037600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:21036800-21039000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:21037000-21039000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:21037000-21039000	Enhancers	HMEC	breast
6	chr7:21037000-21039000	Enhancers	NHEK	skin
7	chr7:21037000-21039200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:21037400-21038400	Enhancers	HUES6 Cell Line	embryonic stem cell

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