Variant report

Variant	rs71526346
Chromosome Location	chr7:21026899-21026900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10248290	0.86[ASN][1000 genomes]
rs12666907	0.86[ASN][1000 genomes]
rs12673253	0.86[ASN][1000 genomes]
rs13232210	0.86[AFR][1000 genomes]
rs17675913	0.91[AFR][1000 genomes]
rs17676127	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17676175	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17732809	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs17733498	0.83[EUR][1000 genomes]
rs1860872	0.87[ASN][1000 genomes]
rs2192056	0.86[ASN][1000 genomes]
rs2215678	0.87[ASN][1000 genomes]
rs2215679	0.87[ASN][1000 genomes]
rs34346814	0.82[EUR][1000 genomes]
rs34369077	0.83[EUR][1000 genomes]
rs34388702	0.83[EUR][1000 genomes]
rs34490482	0.83[EUR][1000 genomes]
rs34562194	0.83[EUR][1000 genomes]
rs34578613	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35289319	0.81[EUR][1000 genomes]
rs35563344	0.83[EUR][1000 genomes]
rs36005121	0.83[EUR][1000 genomes]
rs36070274	0.83[EUR][1000 genomes]
rs3810893	0.83[EUR][1000 genomes]
rs3827656	0.83[EUR][1000 genomes]
rs4281024	0.83[EUR][1000 genomes]
rs58620271	0.83[EUR][1000 genomes]
rs71526347	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7788251	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21004200-21028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:21026800-21028400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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