Variant report

Variant	rs7788251
Chromosome Location	chr7:21013709-21013710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10248290	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12113935	0.82[EUR][1000 genomes]
rs12666907	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12673253	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13228761	0.82[EUR][1000 genomes]
rs1860872	0.87[EUR][1000 genomes]
rs2192056	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2215678	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2215679	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35312925	0.81[EUR][1000 genomes]
rs35462998	0.82[EUR][1000 genomes]
rs4598145	0.81[EUR][1000 genomes]
rs6461528	0.81[EUR][1000 genomes]
rs6944551	0.82[EUR][1000 genomes]
rs71526346	0.92[ASN][1000 genomes]
rs7779016	0.85[EUR][1000 genomes]
rs7779289	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv887838	chr7:20862302-21016683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7788251	KLHL7	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21004200-21028000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:21011000-21014600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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