Variant report

Variant	rs4598145
Chromosome Location	chr7:21032355-21032356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10248290	0.87[EUR][1000 genomes]
rs10499520	0.84[AFR][1000 genomes]
rs12113935	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666907	0.85[EUR][1000 genomes]
rs12673253	0.87[EUR][1000 genomes]
rs12700247	0.98[ASN][1000 genomes]
rs13228761	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232210	0.98[ASN][1000 genomes]
rs17675673	0.98[ASN][1000 genomes]
rs17675913	0.98[ASN][1000 genomes]
rs17676127	1.00[ASN][1000 genomes]
rs17676175	0.89[ASN][1000 genomes]
rs17732288	0.95[ASN][1000 genomes]
rs17732809	1.00[ASN][1000 genomes]
rs17733498	0.95[ASN][1000 genomes]
rs1860872	0.86[EUR][1000 genomes]
rs2192056	0.86[EUR][1000 genomes]
rs2215678	0.87[EUR][1000 genomes]
rs2215679	0.87[EUR][1000 genomes]
rs34346814	1.00[ASN][1000 genomes]
rs34369077	1.00[ASN][1000 genomes]
rs34388702	1.00[ASN][1000 genomes]
rs34490482	1.00[ASN][1000 genomes]
rs34562194	0.96[ASN][1000 genomes]
rs34578613	1.00[ASN][1000 genomes]
rs35289319	1.00[ASN][1000 genomes]
rs35312925	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35462998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35563344	1.00[ASN][1000 genomes]
rs35831036	0.98[ASN][1000 genomes]
rs36005121	1.00[ASN][1000 genomes]
rs36070274	0.96[ASN][1000 genomes]
rs3810893	1.00[ASN][1000 genomes]
rs3827656	1.00[ASN][1000 genomes]
rs4281024	1.00[ASN][1000 genomes]
rs58620271	1.00[ASN][1000 genomes]
rs6461528	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526347	1.00[ASN][1000 genomes]
rs73269804	0.84[AFR][1000 genomes]
rs7779016	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7779289	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7788251	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030726	chr7:20506095-21086719	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv830920	chr7:21014535-21201580	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv971201	chr7:21028141-21034740	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4598145	KLHL7	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21031800-21032800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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