Variant report

Variant	rs3828917
Chromosome Location	chr6:31465917-31465918
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:253)
CpG islands
(count:183)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:253 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr6:31465341-31466129	GM12878	blood:	n/a	chr6:31466064-31466075
2	CBX3	chr6:31465272-31466294	K562	blood:	n/a	n/a
3	POLR2A	chr6:31465388-31465934	ProgFib	skin:	n/a	n/a
4	TAF1	chr6:31465784-31466092	GM12891	blood:	n/a	n/a
5	NFYA	chr6:31465491-31465976	Hela-S3	cervix:	n/a	chr6:31465815-31465833
6	GTF2F1	chr6:31465762-31465976	H1-hESC	embryonic stem cell:	n/a	n/a
7	USF1	chr6:31465685-31466016	ECC-1	luminal epithelium:	n/a	chr6:31465880-31465891
8	MAX	chr6:31465675-31466040	H1-hESC	embryonic stem cell:	n/a	chr6:31465804-31465814
9	TAF1	chr6:31465243-31466190	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr6:31465143-31466219	PANC-1	pancreas:	n/a	n/a
11	WRNIP1	chr6:31465900-31466098	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:31465795-31466032	A549	lung:	n/a	n/a
13	HEY1	chr6:31465253-31466184	HepG2	liver:	n/a	chr6:31465706-31465721 chr6:31466069-31466084 chr6:31466072-31466087
14	USF1	chr6:31465621-31466086	ECC-1	luminal epithelium:	n/a	chr6:31465880-31465891
15	E2F4	chr6:31465746-31465963	GM12878	blood:	n/a	chr6:31465823-31465832
16	NFYB	chr6:31465600-31465961	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr6:31465208-31466106	Hela-S3	cervix:	n/a	n/a
18	SREBP1	chr6:31465218-31466303	GM12878	blood:	n/a	chr6:31465609-31465620
19	USF1	chr6:31465643-31465957	SK-N-SH_RA	brain:	n/a	chr6:31465880-31465891
20	MXI1	chr6:31465367-31466086	HepG2	liver:	n/a	n/a
21	GTF2F1	chr6:31465780-31466058	K562	blood:	n/a	n/a
22	E2F6	chr6:31465324-31466288	A549	lung:	n/a	chr6:31465823-31465832 chr6:31466066-31466075
23	POLR2A	chr6:31465496-31466041	GM12878	blood:	n/a	n/a
24	MAX	chr6:31465368-31466088	H1-hESC	embryonic stem cell:	n/a	chr6:31465804-31465814
25	POLR2A	chr6:31465576-31466066	H1-hESC	embryonic stem cell:	n/a	n/a
26	E2F6	chr6:31465394-31466220	K562	blood:	n/a	chr6:31465823-31465832 chr6:31466066-31466075
27	HEY1	chr6:31465821-31466045	HepG2	liver:	n/a	n/a
28	POLR2A	chr6:31465277-31466085	GM12891	blood:	n/a	n/a
29	MYC	chr6:31465447-31466097	K562	blood:	n/a	chr6:31465804-31465814
30	E2F4	chr6:31465445-31466217	K562	blood:	n/a	chr6:31465823-31465832 chr6:31466066-31466075
31	SIN3AK20	chr6:31465256-31466279	MCF-7	breast:	n/a	n/a
32	MAX	chr6:31465322-31466167	ECC-1	luminal epithelium:	n/a	chr6:31465804-31465814
33	YY1	chr6:31465789-31466184	GM12892	blood:	n/a	chr6:31465803-31465817
34	YY1	chr6:31465873-31466129	GM12878	blood:	n/a	n/a
35	TBP	chr6:31465465-31466140	K562	blood:	n/a	n/a
36	TAF1	chr6:31465237-31466197	GM12878	blood:	n/a	n/a
37	MAZ	chr6:31465536-31466097	K562	blood:	n/a	chr6:31465804-31465814
38	MAX	chr6:31465354-31466300	HepG2	liver:	n/a	chr6:31465804-31465814
39	CTCF	chr6:31465820-31465970	GM12873	blood:	n/a	n/a
40	POLR2A	chr6:31465305-31466266	K562	blood:	n/a	n/a
41	UBTF	chr6:31465398-31466140	K562	blood:	n/a	n/a
42	TAF1	chr6:31465797-31465991	SK-N-SH	brain:	n/a	n/a
43	STAT1	chr6:31465473-31465949	GM12878	blood:	n/a	n/a
44	POLR2A	chr6:31465785-31466113	H1-hESC	embryonic stem cell:	n/a	n/a
45	ELK1	chr6:31465395-31466083	GM12878	blood:	n/a	n/a
46	SIN3AK20	chr6:31465333-31466169	K562	blood:	n/a	n/a
47	SP1	chr6:31465598-31465986	GM12878	blood:	n/a	chr6:31465803-31465814 chr6:31465804-31465813 chr6:31465805-31465814 chr6:31465804-31465814 chr6:31465803-31465815 chr6:31465804-31465818 chr6:31465803-31465815
48	POLR2A	chr6:31465299-31466236	GM12878	blood:	n/a	n/a
49	NR2F2	chr6:31465407-31466189	K562	blood:	n/a	n/a
50	NFYA	chr6:31465559-31465996	K562	blood:	n/a	chr6:31465815-31465833

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31465898-31465948	MCF-7	breast:	n/a
2	chr6:31465876-31465926	GM06990	blood:	n/a
3	chr6:31465901-31465951	HCM	heart:	n/a
4	chr6:31465901-31465951	PANC-1	pancreas:	n/a
5	chr6:31465898-31465948	ovcar-3	ovarian:	n/a
6	chr6:31465876-31465926	U87	brain:	n/a
7	chr6:31465898-31465948	HNPCEpiC	eye:	n/a
8	chr6:31465876-31465926	IMR90	lung:	fetal
9	chr6:31465901-31465951	GM12891	blood:	n/a
10	chr6:31465898-31465948	SK-N-SH	brain:	n/a
11	chr6:31465876-31465926	NB4	blood:	n/a
12	chr6:31465901-31465951	Jurkat	blood:	n/a
13	chr6:31465901-31465951	MCF-7	breast:	n/a
14	chr6:31465876-31465926	HCF	heart:	n/a
15	chr6:31465876-31465926	HAEpiC	amniotic membrane:	n/a
16	chr6:31465876-31465926	HRCEpiC	kidney:	n/a
17	chr6:31465898-31465948	PrEC	prostate:	n/a
18	chr6:31465876-31465926	HRE	kidney:	n/a
19	chr6:31465898-31465948	MCF10A-Er-Src	breast:	n/a
20	chr6:31465876-31465926	GM12892	blood:	n/a
21	chr6:31465898-31465948	HPAEpiC	pulmonary alveolar:	n/a
22	chr6:31465898-31465948	GM12892	blood:	n/a
23	chr6:31465901-31465951	HNPCEpiC	eye:	n/a
24	chr6:31465901-31465951	SK-N-MC	brain:	n/a
25	chr6:31465901-31465951	SK-N-SH	brain:	n/a
26	chr6:31465898-31465948	AG10803	skin:	n/a
27	chr6:31465898-31465948	NT2-D1	testis:	n/a
28	chr6:31465901-31465951	IMR90	lung:	fetal
29	chr6:31465901-31465951	CMK	blood:	n/a
30	chr6:31465876-31465926	CMK	blood:	n/a
31	chr6:31465901-31465951	MCF10A-Er-Src	breast:	n/a
32	chr6:31465898-31465948	AG09309	skin:	n/a
33	chr6:31465898-31465948	HRPEpiC	eye:	n/a
34	chr6:31465898-31465948	Caco-2	colon:	n/a
35	chr6:31465876-31465926	Hela-S3	cervix:	n/a
36	chr6:31465901-31465951	ProgFib	skin:	n/a
37	chr6:31465901-31465951	AG10803	skin:	n/a
38	chr6:31465898-31465948	GM19239	blood:	n/a
39	chr6:31465898-31465948	NB4	blood:	n/a
40	chr6:31465901-31465951	BJ	skin:	n/a
41	chr6:31465898-31465948	HEK293	kidney:	embryo
42	chr6:31465901-31465951	HepG2	liver:	n/a
43	chr6:31465876-31465926	HIPEpiC	eye:	n/a
44	chr6:31465876-31465926	AG04449	skin:	fetal
45	chr6:31465898-31465948	HCM	heart:	n/a
46	chr6:31465901-31465951	HEEpiC	esophagus:	n/a
47	chr6:31465901-31465951	SKMC	muscle:	n/a
48	chr6:31465898-31465948	Jurkat	blood:	n/a
49	chr6:31465901-31465951	GM12892	blood:	n/a
50	chr6:31465901-31465951	HPAEpiC	pulmonary alveolar:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31465292..31466331-chr6:31508544..31510586,5	MCF-7	breast:
2	chr6:31465865..31468194-chr6:31588116..31590521,2	K562	blood:
3	chr6:31462628..31467072-chr6:31508179..31511597,8	MCF-7	breast:
4	chr6:31465192..31467253-chr6:31513874..31515853,2	K562	blood:
5	chr6:31459710..31467567-chr6:31506191..31511027,18	MCF-7	breast:
6	chr6:31465504..31467038-chr6:31547558..31550219,2	K562	blood:
7	chr6:31464396..31467286-chr6:31513352..31515783,2	MCF-7	breast:
8	chr6:31465192..31467276-chr6:31514353..31517870,3	K562	blood:
9	chr6:31458384..31468965-chr6:31503613..31512721,28	K562	blood:
10	chr6:31464473..31467635-chr6:31497399..31499705,3	K562	blood:
11	chr6:31465872..31468233-chr6:31483089..31485980,2	K562	blood:
12	chr6:31465772..31468196-chr6:31473322..31475577,2	K562	blood:
13	chr6:31371228..31373084-chr6:31465857..31468794,2	K562	blood:
14	chr6:31462191..31465976-chr6:31584426..31588689,4	K562	blood:
15	chr6:31460486..31468205-chr6:31503942..31512721,23	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201680	TF binding region
MICB	TF binding region
MICB	CpG island
ENSG00000201680	CpG island
ENSG00000204516	Chromatin interaction
ENSG00000256851	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000201785	Chromatin interaction
ENSG00000227507	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000204498	Chromatin interaction
ENSG00000204520	Chromatin interaction
ENSG00000204469	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17207190	0.81[EUR][1000 genomes]
rs2516474	0.88[EUR][1000 genomes]
rs2734576	0.82[ASN][1000 genomes]
rs28732141	0.83[EUR][1000 genomes]
rs28732142	0.83[EUR][1000 genomes]
rs28732143	0.83[EUR][1000 genomes]
rs28732144	0.81[EUR][1000 genomes]
rs2905725	0.85[EUR][1000 genomes]
rs3093661	0.81[EUR][1000 genomes]
rs3093668	0.83[EUR][1000 genomes]
rs3093726	0.83[EUR][1000 genomes]
rs3093727	0.83[EUR][1000 genomes]
rs41293856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41293887	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41293891	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41293895	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41293899	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41293907	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41293911	0.88[EUR][1000 genomes]
rs41293915	0.88[EUR][1000 genomes]
rs41293919	0.88[EUR][1000 genomes]
rs41293923	0.88[EUR][1000 genomes]
rs4947326	0.82[ASN][1000 genomes]
rs4947327	0.82[ASN][1000 genomes]
rs4959077	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4959078	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4959079	0.82[ASN][1000 genomes]
rs7757162	0.95[EUR][1000 genomes]
rs7757383	0.95[EUR][1000 genomes]
rs9267454	0.82[ASN][1000 genomes]
rs9267456	0.82[ASN][1000 genomes]
rs9267462	0.82[ASN][1000 genomes]
rs9267463	0.82[ASN][1000 genomes]
rs9267464	0.82[ASN][1000 genomes]
rs9267465	0.82[ASN][1000 genomes]
rs9267466	0.82[ASN][1000 genomes]
rs9267487	0.82[ASN][1000 genomes]
rs9267492	0.82[ASN][1000 genomes]
rs9267497	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
4	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
5	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
6	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
8	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
9	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
10	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
11	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
12	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
13	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
14	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
15	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
16	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
17	nsv1018463	chr6:31337336-31525275	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
18	nsv538189	chr6:31337336-31525275	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
19	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
20	esv2752115	chr6:31352880-31498721	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
21	esv1831710	chr6:31352945-31477763	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
22	esv2752118	chr6:31353329-31481321	Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
23	esv2757162	chr6:31353329-31542308	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
24	esv1827731	chr6:31353930-31471391	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
25	esv1833123	chr6:31353930-31471391	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
26	esv1832352	chr6:31355100-31477763	Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
27	esv34684	chr6:31359621-31474688	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
28	esv2752119	chr6:31359621-31498521	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
29	nsv1020595	chr6:31360095-31474688	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
30	nsv1022499	chr6:31360095-31485174	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
31	nsv1026211	chr6:31362310-31474688	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
32	nsv1018716	chr6:31362310-31481299	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
33	esv3434932	chr6:31377226-31471978	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
34	esv3362717	chr6:31377565-31479170	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
35	nsv432874	chr6:31379821-31498521	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
36	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
37	nsv432877	chr6:31412961-31528690	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
38	nsv1018960	chr6:31446366-31481299	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
39	nsv1015886	chr6:31448533-31480272	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
40	nsv1025961	chr6:31448533-31497835	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
41	nsv1021578	chr6:31448533-31498737	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
42	nsv10821	chr6:31453261-31476482	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
43	nsv601937	chr6:31457178-31475486	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
44	nsv601938	chr6:31457742-31472720	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
45	nsv884412	chr6:31458205-31466547	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
46	esv1825236	chr6:31458277-31476322	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
47	nsv601939	chr6:31458633-31472459	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
48	nsv884413	chr6:31458633-31479788	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
49	nsv884414	chr6:31458633-31498497	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
50	nsv884415	chr6:31458633-31501413	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs3828917	XXbac-BPG181B23.7	cis	Whole Blood	GTEx
rs3828917	MICB	cis	Thyroid	GTEx
rs3828917	MICB	cis	Adipose Subcutaneous	GTEx
rs3828917	MICB	Cis_1M	lymphoblastoid	RTeQTL
rs3828917	MICB	cis	uninvolved skin	skin_eQTL
rs3828917	MICB	cis	lymphoblastoid	seeQTL
rs3828917	MICB	cis	Whole Blood	GTEx
rs3828917	MICA///MICB	N/A	lymphoblastoid	RTeQTL
rs3828917	MICB	cis	Heart Left Ventricle	GTEx
rs3828917	MICB	cis	Nerve Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31459400-31466600	Active TSS	GM12878-XiMat	blood
2	chr6:31462800-31466800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:31464400-31467600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:31464600-31466000	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
5	chr6:31464600-31466200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr6:31464600-31466400	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr6:31464600-31467400	Flanking Active TSS	Dnd41	blood
8	chr6:31464800-31466800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:31464800-31467400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr6:31465000-31466000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:31465000-31466000	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
12	chr6:31465000-31466200	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:31465000-31466200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:31465000-31466200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
15	chr6:31465000-31466400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:31465000-31466800	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr6:31465000-31467000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:31465000-31467400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:31465200-31466000	Bivalent/Poised TSS	Fetal Kidney	kidney
20	chr6:31465200-31466000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
21	chr6:31465200-31466000	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
22	chr6:31465200-31466200	Flanking Active TSS	Liver	Liver
23	chr6:31465200-31466200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
24	chr6:31465200-31466200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
25	chr6:31465200-31466400	Active TSS	Aorta	Aorta
26	chr6:31465200-31466600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:31465200-31466600	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr6:31465200-31466600	Active TSS	Right Ventricle	heart
29	chr6:31465200-31466600	Active TSS	NHDF-Ad	bronchial
30	chr6:31465200-31466800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr6:31465200-31466800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
32	chr6:31465200-31467000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr6:31465200-31467000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:31465200-31467000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
35	chr6:31465200-31467400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
36	chr6:31465200-31467400	Active TSS	H9 Cell Line	embryonic stem cell
37	chr6:31465200-31467400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
38	chr6:31465400-31466000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:31465400-31466000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:31465400-31466000	Flanking Bivalent TSS/Enh	Placenta	Placenta
41	chr6:31465400-31466000	Active TSS	Lung	lung
42	chr6:31465400-31466200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:31465400-31466200	Bivalent Enhancer	Fetal Brain Male	brain
44	chr6:31465400-31466200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
45	chr6:31465400-31466200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
46	chr6:31465400-31466200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
47	chr6:31465400-31466200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
48	chr6:31465400-31466200	Active TSS	Ovary	ovary
49	chr6:31465400-31466200	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
50	chr6:31465400-31466200	Active TSS	HSMMtube	muscle

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