Variant report

Variant	rs41293919
Chromosome Location	chr6:31509980-31509981
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:457)
CpG islands
(count:61)
Chromatin interactive
region (count:54)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:457 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31508687-31511132	K562	blood:	n/a	n/a
2	POLR2A	chr6:31508592-31510388	K562	blood:	n/a	n/a
3	REST	chr6:31509972-31510612	GM12878	blood:	n/a	chr6:31510328-31510337 chr6:31510323-31510343
4	CREB1	chr6:31509970-31510331	A549	lung:	n/a	n/a
5	PML	chr6:31508762-31510519	K562	blood:	n/a	n/a
6	TAF1	chr6:31509970-31510392	HepG2	liver:	n/a	n/a
7	BHLHE40	chr6:31509549-31510366	K562	blood:	n/a	n/a
8	YY1	chr6:31508832-31510410	ECC-1	luminal epithelium:	n/a	chr6:31509513-31509530
9	GTF2F1	chr6:31508890-31510549	Hela-S3	cervix:	n/a	n/a
10	GTF2F1	chr6:31509088-31510370	K562	blood:	n/a	n/a
11	HDAC2	chr6:31509975-31510350	K562	blood:	n/a	n/a
12	MXI1	chr6:31508916-31510404	HepG2	liver:	n/a	n/a
13	EGR1	chr6:31509330-31510013	MCF-7	breast:	n/a	n/a
14	FOXM1	chr6:31508540-31510464	GM12878	blood:	n/a	n/a
15	ATF2	chr6:31509236-31510314	H1-hESC	embryonic stem cell:	n/a	n/a
16	STAT3	chr6:31509792-31510533	MCF10A-Er-Src	breast:	n/a	chr6:31510311-31510322 chr6:31510225-31510237
17	POLR2A	chr6:31508792-31510564	HL-60	blood:	n/a	n/a
18	SMARCB1	chr6:31509059-31510681	Hela-S3	cervix:	n/a	chr6:31510356-31510365
19	POLR2A	chr6:31508794-31510480	H1-hESC	embryonic stem cell:	n/a	n/a
20	HEY1	chr6:31508988-31510437	HepG2	liver:	n/a	n/a
21	REST	chr6:31509959-31510502	U87	brain:	n/a	chr6:31510328-31510337 chr6:31510323-31510343
22	ZBTB33	chr6:31509500-31510138	A549	lung:	n/a	n/a
23	POLR2A	chr6:31508882-31510438	NB4	blood:	n/a	n/a
24	GTF2F1	chr6:31509025-31510399	H1-hESC	embryonic stem cell:	n/a	n/a
25	TAF1	chr6:31508861-31510482	ECC-1	luminal epithelium:	n/a	n/a
26	MAX	chr6:31508766-31510836	K562	blood:	n/a	n/a
27	TAF1	chr6:31508842-31510533	PFSK-1	brain:	n/a	n/a
28	EP300	chr6:31509372-31510125	A549	lung:	n/a	n/a
29	POLR2A	chr6:31509329-31510437	GM18526	blood:	n/a	n/a
30	MXI1	chr6:31508889-31510468	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr6:31509022-31510422	GM18951	blood:	n/a	n/a
32	MAX	chr6:31509463-31510400	H1-hESC	embryonic stem cell:	n/a	n/a
33	RUNX3	chr6:31508824-31510376	GM12878	blood:	n/a	n/a
34	SP4	chr6:31509123-31510423	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr6:31508618-31511594	HepG2	liver:	n/a	n/a
36	MYC	chr6:31509399-31510357	HepG2	liver:	n/a	n/a
37	RELA	chr6:31508837-31510392	GM12891	blood:	n/a	n/a
38	SRF	chr6:31509544-31509992	GM12878	blood:	n/a	n/a
39	CHD2	chr6:31508906-31510350	GM12878	blood:	n/a	n/a
40	MTA3	chr6:31508398-31510639	GM12878	blood:	n/a	n/a
41	MYC	chr6:31509058-31510385	H1-hESC	embryonic stem cell:	n/a	n/a
42	IRF3	chr6:31509566-31510147	GM12878	blood:	n/a	n/a
43	GABPA	chr6:31509006-31510444	A549	lung:	n/a	n/a
44	REST	chr6:31509919-31510656	H1-hESC	embryonic stem cell:	n/a	chr6:31510328-31510337 chr6:31510323-31510343
45	MAX	chr6:31509222-31510556	MCF-7	breast:	n/a	n/a
46	POLR2A	chr6:31508784-31510863	K562	blood:	n/a	n/a
47	MAX	chr6:31508860-31510461	Hela-S3	cervix:	n/a	n/a
48	POLR2A	chr6:31508782-31510412	H1-hESC	embryonic stem cell:	n/a	n/a
49	NR2F2	chr6:31508782-31510507	K562	blood:	n/a	n/a
50	BHLHE40	chr6:31509357-31510379	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31509945-31509995	AG09319	gingival:	n/a
2	chr6:31509945-31509995	SAEC	small airway:	n/a
3	chr6:31509945-31509995	BJ	skin:	n/a
4	chr6:31509945-31509995	HMEC	breast:	n/a
5	chr6:31509945-31509995	HIPEpiC	eye:	n/a
6	chr6:31509945-31509995	GM12892	blood:	n/a
7	chr6:31509945-31509995	HEEpiC	esophagus:	n/a
8	chr6:31509945-31509995	Hela-S3	cervix:	n/a
9	chr6:31509945-31509995	AG09309	skin:	n/a
10	chr6:31509945-31509995	NHBE	bronchial:	n/a
11	chr6:31509945-31509995	IMR90	lung:	fetal
12	chr6:31509945-31509995	ProgFib	skin:	n/a
13	chr6:31509945-31509995	GM19239	blood:	n/a
14	chr6:31509945-31509995	NHDF-neo	bronchial:	n/a
15	chr6:31509945-31509995	H1-hESC	embryonic stem cell:	embryo
16	chr6:31509945-31509995	AG10803	skin:	n/a
17	chr6:31509945-31509995	ECC-1	luminal epithelium:	n/a
18	chr6:31509945-31509995	RPTEC	kidney:	n/a
19	chr6:31509945-31509995	HCM	heart:	n/a
20	chr6:31509945-31509995	HPAEpiC	pulmonary alveolar:	n/a
21	chr6:31509945-31509995	CMK	blood:	n/a
22	chr6:31509945-31509995	HRE	kidney:	n/a
23	chr6:31509945-31509995	SK-N-MC	brain:	n/a
24	chr6:31509945-31509995	NT2-D1	testis:	n/a
25	chr6:31509945-31509995	BE2_C	brain:	n/a
26	chr6:31509945-31509995	AG04449	skin:	fetal
27	chr6:31509945-31509995	SK-N-SH_RA	brain:	n/a
28	chr6:31509945-31509995	HCPEpiC	choroid plexus:	n/a
29	chr6:31509945-31509995	HRPEpiC	eye:	n/a
30	chr6:31509945-31509995	HRCEpiC	kidney:	n/a
31	chr6:31509945-31509995	Caco-2	colon:	n/a
32	chr6:31509945-31509995	T-47D	breast:	n/a
33	chr6:31509945-31509995	A549	lung:	n/a
34	chr6:31509945-31509995	HepG2	liver:	n/a
35	chr6:31509945-31509995	SK-N-SH	brain:	n/a
36	chr6:31509945-31509995	HCT-116	colon:	n/a
37	chr6:31509945-31509995	Jurkat	blood:	n/a
38	chr6:31509945-31509995	PANC-1	pancreas:	n/a
39	chr6:31509945-31509995	ovcar-3	ovarian:	n/a
40	chr6:31509945-31509995	PFSK-1	brain:	n/a
41	chr6:31509945-31509995	MCF-7	breast:	n/a
42	chr6:31509945-31509995	PrEC	prostate:	n/a
43	chr6:31509945-31509995	HL-60	blood:	n/a
44	chr6:31509945-31509995	HNPCEpiC	eye:	n/a
45	chr6:31509945-31509995	NH-A	brain:	n/a
46	chr6:31509945-31509995	LNCaP	prostate:	n/a
47	chr6:31509945-31509995	SKMC	muscle:	n/a
48	chr6:31509945-31509995	AoSMC	blood vessel:	n/a
49	chr6:31509945-31509995	HUVEC	blood vessel:	n/a
50	chr6:31509945-31509995	GM06990	blood:	n/a

(count:54 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:31508088..31512302-chr6:31792582..31797881,5	K562	blood:
2	chr6:31508602..31511012-chr6:31803135..31806104,3	K562	blood:
3	chr6:31507549..31510479-chr6:31669713..31671247,2	MCF-7	breast:
4	chr6:31508752..31512657-chr6:31701865..31705930,6	K562	blood:
5	chr6:31509573..31511941-chr6:31658992..31661656,2	K562	blood:
6	chr6:31509627..31511469-chr6:31626737..31628735,4	MCF-7	breast:
7	chr6:31507082..31511713-chr6:31583957..31591905,17	MCF-7	breast:
8	chr6:31506561..31512642-chr6:31697539..31702106,5	K562	blood:
9	chr6:31507867..31510784-chr6:31781026..31784406,3	MCF-7	breast:
10	chr6:31507451..31516055-chr6:31617949..31624791,11	MCF-7	breast:
11	chr3:48754255..48755080-chr6:31509286..31510239,2	Hela-S3	cervix:
12	chr6:31508352..31511076-chr6:31794765..31796870,2	MCF-7	breast:
13	chr6:31506496..31512275-chr6:31630248..31634828,11	K562	blood:
14	chr6:31459710..31467567-chr6:31506191..31511027,18	MCF-7	breast:
15	chr6:31368721..31370487-chr6:31508420..31510652,2	K562	blood:
16	chr6:31508667..31511581-chr6:31742885..31745171,3	MCF-7	breast:
17	chr6:31508285..31510798-chr6:31940056..31942252,2	K562	blood:
18	chr6:31509002..31510673-chr6:31830602..31832330,2	K562	blood:
19	chr6:31508080..31511338-chr6:31773122..31775825,3	K562	blood:
20	chr6:31506740..31512488-chr6:31586502..31592966,30	K562	blood:
21	chr6:31509079..31511785-chr6:31559160..31560764,2	MCF-7	breast:
22	chr6:31508345..31511059-chr6:31794031..31797026,5	K562	blood:
23	chr6:31508732..31511014-chr6:31781931..31784408,2	K562	blood:
24	chr6:31507082..31510843-chr6:31599707..31603450,4	K562	blood:
25	chr6:31506595..31512441-chr6:31585525..31590767,30	K562	blood:
26	chr6:31508417..31511292-chr6:31625631..31629953,4	K562	blood:
27	chr6:31508578..31511041-chr6:31743489..31745514,2	K562	blood:
28	chr6:31509573..31511196-chr6:31578119..31580506,2	K562	blood:
29	chr17:17399330..17400214-chr6:31509455..31510221,2	Hela-S3	cervix:
30	chr19:2269416..2270012-chr6:31509789..31510358,2	Hela-S3	cervix:
31	chr6:31465292..31466331-chr6:31508544..31510586,5	MCF-7	breast:
32	chr6:31509091..31511742-chr6:31868193..31871571,3	MCF-7	breast:
33	chr6:31507205..31511686-chr6:31618024..31622039,13	K562	blood:
34	chr6:31458384..31468965-chr6:31503613..31512721,28	K562	blood:
35	chr6:31509610..31511925-chr6:31559593..31562422,2	K562	blood:
36	chr6:31507998..31511841-chr6:31541735..31545245,5	MCF-7	breast:
37	chr6:31508169..31513281-chr6:31547465..31550370,6	K562	blood:
38	chr6:31507710..31510101-chr6:31604073..31606097,3	K562	blood:
39	chr6:31508286..31510817-chr6:31550087..31552108,2	K562	blood:
40	chr6:31507406..31516955-chr6:31615847..31623354,26	K562	blood:
41	chr6:31507927..31511187-chr6:31633283..31638231,4	MCF-7	breast:
42	chr5:218148..218733-chr6:31509563..31510323,2	Hela-S3	cervix:
43	chr6:31505350..31512312-chr6:31630543..31635379,11	K562	blood:
44	chr6:31506029..31511048-chr6:31626239..31630287,7	MCF-7	breast:
45	chr6:31507058..31511692-chr6:31586700..31590601,11	MCF-7	breast:
46	chr6:31509522..31512324-chr6:31604128..31605952,2	K562	blood:
47	chr6:31462628..31467072-chr6:31508179..31511597,8	MCF-7	breast:
48	chr6:31368987..31371166-chr6:31508549..31510652,2	K562	blood:
49	chr6:31508700..31511164-chr6:32162690..32164850,2	K562	blood:
50	chr6:31460486..31468205-chr6:31503942..31512721,23	K562	blood:

No data

Variant related genes	Relation type
DDX39B-AS1	TF binding region
SNORD84	TF binding region
DDX39B	TF binding region
NFKBIL1	TF binding region
NFKBIL1	CpG island
SNORD84	CpG island
DDX39B-AS1	CpG island
DDX39B	CpG island
ENSG00000204301	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000227507	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000213722	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204516	Chromatin interaction
ENSG00000068745	Chromatin interaction
ENSG00000167476	Chromatin interaction
ENSG00000201680	Chromatin interaction
ENSG00000227198	Chromatin interaction
ENSG00000201754	Chromatin interaction
ENSG00000232810	Chromatin interaction
ENSG00000204475	Chromatin interaction
ENSG00000204469	Chromatin interaction
ENSG00000204427	Chromatin interaction
ENSG00000104904	Chromatin interaction
ENSG00000164366	Chromatin interaction
ENSG00000204396	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000199332	Chromatin interaction
ENSG00000200816	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000073578	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000204366	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000108551	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000213654	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000230622	Chromatin interaction
ENSG00000240053	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000226979	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204387	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17207190	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2516474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28381344	0.83[AMR][1000 genomes]
rs28732141	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28732142	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28732143	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28732144	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28732145	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28732153	0.83[AMR][1000 genomes]
rs28732155	0.83[AMR][1000 genomes]
rs28732156	0.83[AMR][1000 genomes]
rs28732159	0.83[AMR][1000 genomes]
rs28732160	0.83[AMR][1000 genomes]
rs28895015	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2905741	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3021366	1.00[ASN][1000 genomes]
rs3093661	0.93[EUR][1000 genomes]
rs3093668	0.95[EUR][1000 genomes]
rs3093726	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3093727	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828917	0.88[EUR][1000 genomes]
rs41293856	0.88[EUR][1000 genomes]
rs41293860	0.88[EUR][1000 genomes]
rs41293879	0.88[EUR][1000 genomes]
rs41293887	0.93[EUR][1000 genomes]
rs41293891	0.88[EUR][1000 genomes]
rs41293895	0.98[EUR][1000 genomes]
rs41293899	0.98[EUR][1000 genomes]
rs41293907	0.98[EUR][1000 genomes]
rs41293911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41293915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41293923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41315808	0.83[AMR][1000 genomes]
rs4947326	0.81[EUR][1000 genomes]
rs4947327	0.81[EUR][1000 genomes]
rs4959077	0.93[EUR][1000 genomes]
rs4959078	0.98[EUR][1000 genomes]
rs7757162	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757383	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9267497	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
4	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
5	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
6	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
7	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
9	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
10	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
11	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
12	nsv1018463	chr6:31337336-31525275	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
13	nsv538189	chr6:31337336-31525275	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
14	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
15	esv2757162	chr6:31353329-31542308	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
16	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
17	nsv432877	chr6:31412961-31528690	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
18	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
19	nsv470809	chr6:31496915-31544189	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31506600-31510400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:31507600-31510800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:31507800-31510600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:31508000-31510200	Active TSS	Fetal Brain Female	brain
5	chr6:31508000-31510800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr6:31508000-31511600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:31508200-31510200	Active TSS	NH-A	brain
8	chr6:31508200-31510800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:31508200-31511000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:31508200-31511000	Active TSS	NHLF	lung
11	chr6:31508200-31511400	Active TSS	GM12878-XiMat	blood
12	chr6:31508400-31510400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:31508400-31510400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:31508400-31510400	Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:31508400-31510400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:31508400-31510400	Active TSS	Fetal Heart	heart
17	chr6:31508400-31510400	Active TSS	Fetal Stomach	stomach
18	chr6:31508400-31510400	Active TSS	Pancreas	Pancrea
19	chr6:31508400-31510400	Active TSS	HSMM	muscle
20	chr6:31508400-31510600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:31508400-31510600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:31508400-31510600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:31508400-31510600	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr6:31508400-31510600	Active TSS	Esophagus	oesophagus
25	chr6:31508400-31510600	Active TSS	Fetal Kidney	kidney
26	chr6:31508400-31510600	Active TSS	Fetal Lung	lung
27	chr6:31508400-31510600	Active TSS	Gastric	stomach
28	chr6:31508400-31510600	Active TSS	Lung	lung
29	chr6:31508400-31510600	Active TSS	Ovary	ovary
30	chr6:31508400-31510800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:31508400-31510800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:31508400-31510800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:31508400-31510800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:31508400-31510800	Active TSS	Right Ventricle	heart
35	chr6:31508400-31510800	Active TSS	HMEC	breast
36	chr6:31508400-31510800	Active TSS	NHDF-Ad	bronchial
37	chr6:31508400-31511000	Active TSS	H1 Cell Line	embryonic stem cell
38	chr6:31508400-31511000	Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:31508400-31511000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr6:31508400-31511000	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:31508400-31511000	Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr6:31508400-31511000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:31508400-31511000	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr6:31508400-31511000	Active TSS	Left Ventricle	heart
45	chr6:31508400-31511000	Active TSS	Sigmoid Colon	Sigmoid Colon
46	chr6:31508400-31511000	Active TSS	HSMMtube	muscle
47	chr6:31508400-31511200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:31508400-31511200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:31508400-31511600	Active TSS	Psoas Muscle	Psoas
50	chr6:31508600-31510000	Active TSS	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links