Variant report

Variant	rs3829033
Chromosome Location	chr8:125564642-125564643
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125480277..125483193-chr8:125562791..125565125,2	MCF-7	breast:
2	chr8:125562136..125564793-chr8:125591757..125594717,2	MCF-7	breast:
3	chr8:125557600..125560665-chr8:125561474..125566163,6	MCF-7	breast:
4	chr8:125557359..125560396-chr8:125563953..125566035,3	MCF-7	breast:
5	chr8:125563772..125566643-chr8:125826415..125829140,2	K562	blood:
6	chr8:125560928..125566588-chr8:125566852..125577107,17	MCF-7	breast:
7	chr8:125562848..125565782-chr8:125578592..125581341,2	MCF-7	breast:
8	chr8:125561947..125564833-chr8:126009022..126011860,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000255491	Chromatin interaction
ENSG00000272486	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000104549	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10195	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956186	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13253319	0.87[ASN][1000 genomes]
rs13261695	0.81[CEU][hapmap]
rs16899643	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16899656	0.89[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16899660	0.89[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16899708	0.81[CEU][hapmap]
rs17298171	0.90[CEU][hapmap]
rs3812470	0.90[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3812473	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs3829037	1.00[ASN][1000 genomes]
rs4330675	0.89[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4527852	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs4613980	0.87[EUR][1000 genomes]
rs4621790	0.87[EUR][1000 genomes]
rs57929284	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6981043	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs6989097	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6997089	0.89[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71516748	0.87[ASN][1000 genomes]
rs72713019	0.81[EUR][1000 genomes]
rs72713032	0.89[EUR][1000 genomes]
rs72713042	0.89[EUR][1000 genomes]
rs72713045	0.89[EUR][1000 genomes]
rs72713053	0.89[EUR][1000 genomes]
rs72713055	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72713071	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72713073	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72713075	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72713077	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72713084	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72713096	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72713098	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714708	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73704274	0.89[EUR][1000 genomes]
rs9643197	0.90[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125552200-125565200	Weak transcription	Small Intestine	intestine
2	chr8:125552200-125565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:125552200-125568600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:125553400-125568000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:125553400-125568200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:125553400-125575200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:125553400-125575200	Strong transcription	Fetal Muscle Leg	muscle
8	chr8:125553600-125566400	Strong transcription	A549	lung
9	chr8:125553600-125566800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:125553800-125575400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:125553800-125581200	Strong transcription	Fetal Brain Female	brain
12	chr8:125554000-125572400	Strong transcription	Thymus	Thymus
13	chr8:125554000-125574000	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:125554200-125566800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:125554200-125568600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:125554200-125570000	Strong transcription	Fetal Thymus	thymus
17	chr8:125554200-125576200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:125554400-125567400	Strong transcription	Colon Smooth Muscle	Colon
19	chr8:125554400-125568200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr8:125554400-125568400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:125554400-125569000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:125554400-125574200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr8:125554400-125575400	Strong transcription	Primary B cells from cord blood	blood
24	chr8:125554400-125576200	Strong transcription	Fetal Intestine Large	intestine
25	chr8:125554600-125565400	Strong transcription	NH-A	brain
26	chr8:125554600-125566400	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:125554600-125566400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr8:125554600-125566600	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr8:125554600-125566600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr8:125554600-125568000	Strong transcription	Rectal Smooth Muscle	rectum
31	chr8:125554600-125574000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:125554600-125575000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr8:125554600-125575800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr8:125554800-125564800	Strong transcription	Hela-S3	cervix
35	chr8:125554800-125566800	Strong transcription	HSMM	muscle
36	chr8:125554800-125569200	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr8:125555000-125566600	Strong transcription	NHLF	lung
38	chr8:125555000-125568200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:125555200-125566400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:125555200-125566400	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr8:125555200-125566600	Strong transcription	Fetal Kidney	kidney
42	chr8:125555200-125569000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr8:125555200-125574000	Strong transcription	Placenta	Placenta
44	chr8:125555200-125575000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr8:125555200-125575200	Strong transcription	Brain Cingulate Gyrus	brain
46	chr8:125555400-125566400	Strong transcription	NHEK	skin
47	chr8:125555400-125568200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr8:125555600-125567000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr8:125555600-125574200	Strong transcription	Primary T cells from cord blood	blood
50	chr8:125555800-125566600	Strong transcription	HMEC	breast

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