Variant report

Variant	rs6989097
Chromosome Location	chr8:125517649-125517650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125485559..125487740-chr8:125517609..125520546,3	MCF-7	breast:
2	chr8:125484977..125488762-chr8:125516872..125524765,8	MCF-7	breast:
3	chr8:125500685..125503615-chr8:125517583..125520355,2	K562	blood:
4	chr8:125515035..125519543-chr8:125547357..125551225,5	MCF-7	breast:
5	chr8:125499578..125501276-chr8:125515808..125518210,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170881	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000253106	Chromatin interaction
ENSG00000245149	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10195	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10956186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13253319	0.97[ASN][1000 genomes]
rs16899643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899656	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298171	0.86[EUR][1000 genomes]
rs3812470	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812473	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829033	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3829037	0.85[ASN][1000 genomes]
rs4330675	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527852	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4613980	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4621790	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57929284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981043	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6997089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017148	0.88[ASN][1000 genomes]
rs71516748	0.97[ASN][1000 genomes]
rs72713019	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713023	0.85[EUR][1000 genomes]
rs72713032	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713042	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713045	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713053	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713055	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713059	0.86[EUR][1000 genomes]
rs72713071	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713084	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713096	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72713098	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72714708	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73704274	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9643197	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125488200-125550400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:125489000-125519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:125489000-125531200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:125489000-125541200	Weak transcription	Gastric	stomach
5	chr8:125489000-125543400	Weak transcription	Small Intestine	intestine
6	chr8:125493200-125539400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:125496600-125549600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:125496800-125521200	Weak transcription	Fetal Heart	heart
9	chr8:125496800-125547400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:125499000-125537200	Weak transcription	Esophagus	oesophagus
11	chr8:125500000-125526200	Weak transcription	Colonic Mucosa	Colon
12	chr8:125500000-125538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:125500000-125538400	Weak transcription	Psoas Muscle	Psoas
14	chr8:125500000-125549600	Weak transcription	Fetal Brain Male	brain
15	chr8:125500200-125530800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr8:125500400-125526400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr8:125501600-125524600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:125501600-125535000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr8:125501600-125550000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr8:125503800-125518800	Weak transcription	Brain Hippocampus Middle	brain
21	chr8:125504000-125518800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:125504000-125518800	Weak transcription	Brain Substantia Nigra	brain
23	chr8:125504000-125521200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:125504000-125524800	Weak transcription	Pancreas	Pancrea
25	chr8:125504000-125525000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr8:125504000-125525800	Weak transcription	NHLF	lung
27	chr8:125504000-125550800	Weak transcription	Spleen	Spleen
28	chr8:125504400-125518800	Weak transcription	Ovary	ovary
29	chr8:125505800-125538600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:125506000-125538600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr8:125507600-125522000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:125508400-125532200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:125510200-125536800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:125510400-125536200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:125510800-125532200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:125511600-125536400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:125512000-125536000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr8:125512200-125517800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr8:125512200-125528000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:125512200-125530400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:125512200-125531600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:125512400-125519800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr8:125512400-125521800	Strong transcription	Fetal Thymus	thymus
44	chr8:125512400-125522000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:125512400-125522600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:125512400-125528200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr8:125512400-125535800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr8:125512400-125536400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr8:125512600-125520000	Strong transcription	Fetal Muscle Leg	muscle
50	chr8:125512600-125522400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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