Variant report

Variant	rs73704274
Chromosome Location	chr8:125476772-125476773
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125476415..125477216-chr8:125503251..125504111,2	MCF-7	breast:
2	chr8:125476504..125477354-chr8:125503331..125504125,2	MCF-7	breast:
3	chr8:125462932..125466736-chr8:125475964..125478652,6	MCF-7	breast:
4	chr8:125476415..125477216-chr8:125503251..125504111,3	MCF-7	breast:
5	chr8:125473161..125475978-chr8:125476087..125479372,4	K562	blood:
6	chr8:125470564..125475978-chr8:125476516..125479372,6	K562	blood:
7	chr8:124575822..124576635-chr8:125476420..125477334,2	MCF-7	breast:
8	chr8:125476479..125477099-chr8:125550802..125551586,2	MCF-7	breast:
9	chr8:125475979..125479688-chr8:125483655..125487950,7	K562	blood:
10	chr8:125462355..125463185-chr8:125476719..125477309,2	MCF-7	breast:
11	chr8:125475022..125477370-chr8:125550030..125552763,3	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TATDN1-1	chr8:125474740-125479899	XLOC_007206
2	lnc-TATDN1-1	chr8:125474726-125479899	ENSG00000245149
3	lnc-TATDN1-1	chr8:125474738-125479899	NR_108047

No data

Variant related genes	Relation type
ENSG00000245149	Chromatin interaction
ENSG00000147684	Chromatin interaction
ENSG00000170881	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000183665	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10195	0.89[EUR][1000 genomes]
rs10956186	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13253319	0.91[ASN][1000 genomes]
rs16899643	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16899656	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16899660	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17298171	0.86[EUR][1000 genomes]
rs3812470	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812473	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829033	0.89[EUR][1000 genomes]
rs4330675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4527852	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613980	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4621790	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57929284	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6981043	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989097	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6997089	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017148	0.94[ASN][1000 genomes]
rs71516748	0.91[ASN][1000 genomes]
rs72713019	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72713023	0.85[EUR][1000 genomes]
rs72713032	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713042	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713053	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713055	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713059	0.86[EUR][1000 genomes]
rs72713071	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713073	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713075	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713077	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713084	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713096	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72713098	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72714708	0.89[EUR][1000 genomes]
rs9643197	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1034768	chr8:125323011-125481733	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
4	nsv891430	chr8:125431030-125485027	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1017848	chr8:125432689-125489052	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
6	nsv891431	chr8:125437811-125485027	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv891432	chr8:125438093-125485027	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv891433	chr8:125438093-125498547	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125463800-125483800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr8:125464000-125484800	Weak transcription	Aorta	Aorta
3	chr8:125464000-125485000	Weak transcription	Fetal Kidney	kidney
4	chr8:125464400-125479600	Weak transcription	Fetal Intestine Large	intestine
5	chr8:125464600-125477600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:125464600-125478000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:125464600-125478600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:125464600-125483200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr8:125464600-125484600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:125464600-125485200	Weak transcription	Colonic Mucosa	Colon
11	chr8:125464600-125485800	Weak transcription	Esophagus	oesophagus
12	chr8:125464600-125486000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:125464800-125478400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:125464800-125478600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:125464800-125484600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:125464800-125484800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr8:125464800-125485400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:125465000-125477600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:125465000-125477800	Weak transcription	NH-A	brain
20	chr8:125465000-125478600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:125465000-125479000	Weak transcription	HUVEC	blood vessel
22	chr8:125465000-125484400	Weak transcription	NHLF	lung
23	chr8:125465000-125485400	Weak transcription	Gastric	stomach
24	chr8:125465200-125477000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:125465200-125477600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:125465200-125477600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:125465200-125483000	Weak transcription	Fetal Brain Male	brain
28	chr8:125465200-125483200	Weak transcription	Fetal Lung	lung
29	chr8:125465400-125478400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:125465600-125478600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr8:125465600-125482800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:125465600-125484200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:125465600-125484600	Weak transcription	HMEC	breast
34	chr8:125465600-125485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:125466000-125485400	Weak transcription	Lung	lung
36	chr8:125466200-125477400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:125466200-125484600	Weak transcription	Right Ventricle	heart
38	chr8:125466400-125476800	Weak transcription	Liver	Liver
39	chr8:125466400-125478600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:125466400-125478600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr8:125466400-125482800	Weak transcription	NHDF-Ad	bronchial
42	chr8:125466400-125483000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:125466400-125483000	Weak transcription	Brain Anterior Caudate	brain
44	chr8:125466400-125483200	Weak transcription	Spleen	Spleen
45	chr8:125466400-125484000	Weak transcription	Ovary	ovary
46	chr8:125466400-125484600	Weak transcription	A549	lung
47	chr8:125466400-125484800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:125466400-125484800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr8:125466600-125476800	Weak transcription	HSMMtube	muscle
50	chr8:125466600-125478600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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