Variant report

Variant	rs3829103
Chromosome Location	chr9:7170165-7170166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7169706..7171250-chr9:7171522..7173272,2	K562	blood:
2	chr9:7168923..7170527-chr9:7184801..7187324,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1041288	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10758842	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10815534	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10976118	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10976119	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1467700	0.94[ASN][1000 genomes]
rs1887870	0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1887872	0.86[AMR][1000 genomes]
rs1928211	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2011128	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2014332	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2104682	0.97[ASN][1000 genomes]
rs2248904	0.95[ASN][1000 genomes]
rs2381571	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2381572	0.97[ASN][1000 genomes]
rs2494241	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2770728	0.90[AMR][1000 genomes]
rs2770729	0.90[AMR][1000 genomes]
rs2770730	0.89[AMR][1000 genomes]
rs2770733	0.90[AMR][1000 genomes]
rs2770735	0.97[ASN][1000 genomes]
rs2770737	0.97[ASN][1000 genomes]
rs2770742	0.83[AMR][1000 genomes]
rs2770745	0.83[AMR][1000 genomes]
rs2770756	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2770760	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2820910	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2820918	0.83[AMR][1000 genomes]
rs2820919	0.83[AMR][1000 genomes]
rs2820922	0.97[ASN][1000 genomes]
rs2820924	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2820925	0.88[AMR][1000 genomes]
rs2820930	0.89[AMR][1000 genomes]
rs2820934	0.89[AMR][1000 genomes]
rs3753003	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7022345	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7029684	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7031978	0.80[LWK][hapmap]
rs7036627	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs913591	0.95[ASN][1000 genomes]
rs943925	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892191	chr9:7150997-7173752	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
9	nsv519762	chr9:7163530-7172498	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv528873	chr9:7163530-7177936	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7147200-7171000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:7147400-7174600	Weak transcription	NHEK	skin
3	chr9:7148600-7172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:7148600-7185400	Weak transcription	HMEC	breast
5	chr9:7149600-7172200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:7149800-7172800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:7150400-7175800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:7150800-7172800	Weak transcription	Fetal Muscle Leg	muscle
11	chr9:7151200-7171000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:7151200-7173000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
14	chr9:7152000-7172600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:7154400-7174400	Weak transcription	Aorta	Aorta
16	chr9:7154800-7171000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:7160800-7174400	Weak transcription	Fetal Stomach	stomach
18	chr9:7160800-7175200	Strong transcription	Primary B cells from cord blood	blood
19	chr9:7160800-7182000	Weak transcription	Dnd41	blood
20	chr9:7161800-7172000	Weak transcription	Brain Anterior Caudate	brain
21	chr9:7162600-7181600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:7162600-7182200	Weak transcription	Small Intestine	intestine
23	chr9:7163200-7172800	Weak transcription	Right Ventricle	heart
24	chr9:7163200-7177800	Strong transcription	Primary B cells from peripheral blood	blood
25	chr9:7163400-7180600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr9:7163800-7172200	Weak transcription	Psoas Muscle	Psoas
27	chr9:7163800-7179000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr9:7164000-7174600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:7164000-7176200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr9:7164400-7172200	Weak transcription	NHDF-Ad	bronchial
31	chr9:7164600-7178000	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr9:7165200-7170800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:7165400-7172400	Weak transcription	Stomach Mucosa	stomach
34	chr9:7165600-7171000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:7165800-7170800	Weak transcription	Placenta	Placenta
36	chr9:7165800-7174600	Weak transcription	Ovary	ovary
37	chr9:7165800-7176200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:7165800-7179400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr9:7165800-7183800	Weak transcription	Esophagus	oesophagus
40	chr9:7165800-7185400	Weak transcription	Fetal Muscle Trunk	muscle
41	chr9:7166000-7170800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:7166000-7175600	Weak transcription	Colon Smooth Muscle	Colon
43	chr9:7166200-7171400	Weak transcription	Fetal Brain Male	brain
44	chr9:7166200-7172200	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:7166200-7181000	Weak transcription	Hela-S3	cervix
46	chr9:7166400-7170800	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:7166400-7173600	Weak transcription	Spleen	Spleen
48	chr9:7166400-7174600	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:7166400-7176800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:7166600-7172200	Weak transcription	K562	blood

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