Variant report

Variant	rs913591
Chromosome Location	chr9:7184942-7184943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7168923..7170527-chr9:7184801..7187324,2	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1041288	0.87[ASN][1000 genomes]
rs10511462	0.81[CEU][hapmap];0.80[AMR][1000 genomes]
rs10758842	0.94[ASN][1000 genomes]
rs10815533	0.81[AMR][1000 genomes]
rs10815534	0.94[ASN][1000 genomes]
rs10976118	0.86[ASN][1000 genomes]
rs10976119	0.87[ASN][1000 genomes]
rs1467700	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887870	0.88[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1887871	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1928211	0.98[ASN][1000 genomes]
rs1928212	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1958344	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2011128	0.92[ASN][1000 genomes]
rs2014332	0.91[ASN][1000 genomes]
rs2026709	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2026714	0.84[EUR][1000 genomes]
rs2094613	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2104682	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2248904	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2381571	0.97[ASN][1000 genomes]
rs2381572	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2494241	0.87[ASN][1000 genomes]
rs2770731	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2770732	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2770734	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2770735	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2770736	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2770737	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2770741	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2770743	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2770744	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2770747	0.89[AFR][1000 genomes]
rs2770756	0.86[ASN][1000 genomes]
rs2770760	0.86[ASN][1000 genomes]
rs2820910	0.87[ASN][1000 genomes]
rs2820920	0.87[AMR][1000 genomes]
rs2820922	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2820923	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2820924	0.95[ASN][1000 genomes]
rs2820926	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2820927	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2820928	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2820929	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2820931	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3753002	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3753003	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829103	0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7022054	0.92[CEU][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7022345	0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7029684	0.94[ASN][1000 genomes]
rs7036627	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7874501	0.88[CEU][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs913587	0.81[CEU][hapmap];0.80[MEX][hapmap];0.88[AMR][1000 genomes]
rs913589	0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs913590	0.80[AMR][1000 genomes]
rs943925	0.93[ASN][1000 genomes]
rs971380	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
8	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7148600-7185400	Weak transcription	HMEC	breast
2	chr9:7149600-7185400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:7149600-7186200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
5	chr9:7165800-7185400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:7167200-7185600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:7171200-7188200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:7171200-7193000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:7172600-7185400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:7172800-7185400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:7172800-7185400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:7172800-7185600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:7173000-7185600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:7173200-7185200	Weak transcription	NHLF	lung
15	chr9:7173200-7185400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:7173400-7185400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:7173400-7185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:7173400-7185800	Weak transcription	Brain Anterior Caudate	brain
19	chr9:7173400-7186200	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:7173400-7186400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:7175000-7191800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:7175200-7187800	Weak transcription	Ovary	ovary
23	chr9:7176200-7185400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:7176200-7185400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:7176400-7185000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:7176400-7185600	Weak transcription	Spleen	Spleen
27	chr9:7176400-7185800	Weak transcription	Left Ventricle	heart
28	chr9:7176400-7186000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:7176400-7186000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:7176400-7186200	Weak transcription	Adipose Nuclei	Adipose
31	chr9:7176400-7186200	Weak transcription	Pancreas	Pancrea
32	chr9:7176400-7186600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr9:7176400-7188000	Weak transcription	Gastric	stomach
34	chr9:7176600-7185600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr9:7176800-7187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:7177000-7185600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:7177200-7186000	Weak transcription	Fetal Stomach	stomach
38	chr9:7177400-7186000	Weak transcription	Liver	Liver
39	chr9:7177800-7185400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:7178000-7186000	Weak transcription	Fetal Thymus	thymus
41	chr9:7179000-7185800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:7179000-7186000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:7179000-7186400	Weak transcription	Right Ventricle	heart
44	chr9:7180600-7185800	Weak transcription	Fetal Muscle Leg	muscle
45	chr9:7180600-7186200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr9:7181200-7185600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr9:7181400-7185400	Weak transcription	HUVEC	blood vessel
48	chr9:7182000-7185400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:7182400-7186200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:7182600-7186200	Weak transcription	Primary B cells from cord blood	blood

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