Variant report

Variant	rs2820920
Chromosome Location	chr9:7186641-7186642
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7168923..7170527-chr9:7184801..7187324,2	MCF-7	breast:
2	chr9:7052132..7053116-chr9:7186335..7186921,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1011341	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10511462	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10815533	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1467700	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1887871	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1887872	1.00[ASN][1000 genomes]
rs1928212	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1958344	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026709	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2094613	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2104682	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2248904	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2381570	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2381572	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2770728	0.95[ASN][1000 genomes]
rs2770729	0.91[ASN][1000 genomes]
rs2770730	0.95[ASN][1000 genomes]
rs2770731	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2770732	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2770733	0.99[ASN][1000 genomes]
rs2770734	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2770735	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2770736	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2770737	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2770741	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2770742	1.00[ASN][1000 genomes]
rs2770743	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2770744	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2770745	0.98[ASN][1000 genomes]
rs2770746	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2770747	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820918	0.98[ASN][1000 genomes]
rs2820919	0.93[ASN][1000 genomes]
rs2820922	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2820923	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2820925	0.97[ASN][1000 genomes]
rs2820926	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2820927	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2820928	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2820929	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2820930	0.95[ASN][1000 genomes]
rs2820931	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2820934	0.94[ASN][1000 genomes]
rs3753002	0.86[ASN][1000 genomes]
rs3753003	0.81[AMR][1000 genomes]
rs7022054	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7874501	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs913584	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs913587	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs913589	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs913590	0.91[ASN][1000 genomes]
rs913591	0.87[AMR][1000 genomes]
rs971380	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892192	chr9:7153009-7257340	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv2758178	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2759662	chr9:7175387-7482982	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1032465	chr9:7182123-7409755	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv539972	chr9:7182123-7409755	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7151800-7188600	Weak transcription	Colonic Mucosa	Colon
2	chr9:7171200-7188200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:7171200-7193000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:7175000-7191800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:7175200-7187800	Weak transcription	Ovary	ovary
6	chr9:7176400-7188000	Weak transcription	Gastric	stomach
7	chr9:7176800-7187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr9:7183000-7191400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:7186000-7187800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:7186000-7188000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:7186200-7187000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr9:7186200-7187000	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr9:7186200-7192200	Weak transcription	Primary T cells from cord blood	blood
14	chr9:7186400-7187000	ZNF genes & repeats	A549	lung
15	chr9:7186400-7192200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:7186600-7187000	Weak transcription	Right Ventricle	heart
17	chr9:7186600-7188200	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links