Variant report

Variant	rs3829218
Chromosome Location	chr11:58331309-58331310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:58329222..58332135-chr11:58345391..58347279,2	MCF-7	breast:
2	chr11:58331135..58333274-chr11:58333714..58335633,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000186660	Chromatin interaction
ENSG00000110031	Chromatin interaction
ENSG00000255073	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11229438	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.93[TSI][hapmap];0.97[ASN][1000 genomes]
rs11229439	0.94[ASN][1000 genomes]
rs11229440	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.93[TSI][hapmap]
rs11229479	0.97[ASN][1000 genomes]
rs11229532	0.97[ASN][1000 genomes]
rs11229535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229544	0.97[ASN][1000 genomes]
rs11229552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11541682	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12361887	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12365551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17473544	0.95[ASN][1000 genomes]
rs17489568	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17568220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1800169	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1938601	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2186381	0.93[EUR][1000 genomes]
rs2298607	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60767173	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60998298	1.00[ASN][1000 genomes]
rs7112350	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73470773	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73470778	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7481388	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7482383	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484263	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945889	0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs948562	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58300000-58340600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:58300600-58338600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:58309000-58336200	Weak transcription	NHEK	skin
4	chr11:58309600-58338800	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:58315600-58340400	Weak transcription	Stomach Mucosa	stomach
6	chr11:58318200-58336400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:58318400-58341000	Weak transcription	Right Ventricle	heart
8	chr11:58318400-58344800	Weak transcription	Fetal Brain Male	brain
9	chr11:58318600-58344400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:58318800-58332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:58318800-58336800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:58318800-58340600	Weak transcription	NHLF	lung
13	chr11:58318800-58341400	Weak transcription	Psoas Muscle	Psoas
14	chr11:58319200-58343000	Weak transcription	Fetal Brain Female	brain
15	chr11:58320000-58341000	Weak transcription	HSMMtube	muscle
16	chr11:58320200-58340800	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:58320600-58338200	Weak transcription	HMEC	breast
18	chr11:58321600-58336400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:58321600-58337200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:58321600-58340400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:58321800-58340400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:58321800-58341200	Weak transcription	Colonic Mucosa	Colon
23	chr11:58321800-58345000	Weak transcription	Ovary	ovary
24	chr11:58322000-58336400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:58322200-58332400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:58322200-58336400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:58322200-58337000	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:58322400-58332400	Weak transcription	Fetal Stomach	stomach
29	chr11:58322400-58335000	Weak transcription	Dnd41	blood
30	chr11:58322400-58336200	Weak transcription	Placenta	Placenta
31	chr11:58322400-58336400	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:58322400-58336800	Weak transcription	Spleen	Spleen
33	chr11:58322400-58344200	Weak transcription	Fetal Lung	lung
34	chr11:58324400-58336000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:58326400-58331600	Strong transcription	Primary B cells from cord blood	blood
36	chr11:58327000-58332400	Enhancers	Fetal Intestine Small	intestine
37	chr11:58327200-58332400	Enhancers	Fetal Intestine Large	intestine
38	chr11:58327200-58336400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr11:58328600-58331400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:58328600-58332800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr11:58328800-58331800	Genic enhancers	GM12878-XiMat	blood
42	chr11:58328800-58333000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
43	chr11:58329000-58331600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:58329000-58332800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr11:58329000-58333000	Genic enhancers	Primary T cells fromperipheralblood	blood
46	chr11:58329000-58333400	Genic enhancers	Primary T cells from cord blood	blood
47	chr11:58329200-58331400	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr11:58329200-58332400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:58329200-58335000	Weak transcription	Brain Anterior Caudate	brain
50	chr11:58329400-58332400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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