Variant report

Variant	rs7112350
Chromosome Location	chr11:58300754-58300755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11229438	0.97[ASN][1000 genomes]
rs11229439	0.94[ASN][1000 genomes]
rs11229479	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11229532	0.97[ASN][1000 genomes]
rs11229535	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229537	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229544	0.97[ASN][1000 genomes]
rs11229552	0.94[ASN][1000 genomes]
rs11541682	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12361887	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12365551	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17473544	0.95[ASN][1000 genomes]
rs17489568	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17568220	0.94[ASN][1000 genomes]
rs1800169	0.94[ASN][1000 genomes]
rs1938601	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944051	0.97[ASN][1000 genomes]
rs2186381	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2298607	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3829218	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60767173	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60998298	1.00[ASN][1000 genomes]
rs73470773	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73470778	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7481388	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7482383	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7484263	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945889	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs948562	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58292000-58314000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:58292000-58317200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:58292000-58317600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:58292200-58307200	Weak transcription	NHDF-Ad	bronchial
5	chr11:58292200-58311400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:58292200-58312200	Weak transcription	Placenta	Placenta
7	chr11:58292200-58312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:58292200-58314000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:58292200-58316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:58292200-58316600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:58292200-58317200	Weak transcription	Brain Angular Gyrus	brain
12	chr11:58292200-58317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:58292200-58317200	Weak transcription	Fetal Kidney	kidney
14	chr11:58292200-58317400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:58292200-58327400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:58292600-58313800	Weak transcription	Osteobl	bone
17	chr11:58292600-58315000	Weak transcription	Fetal Lung	lung
18	chr11:58293000-58301800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:58293400-58317000	Weak transcription	Fetal Heart	heart
20	chr11:58293400-58317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr11:58293800-58317200	Weak transcription	Brain Germinal Matrix	brain
22	chr11:58294200-58301200	Strong transcription	Adipose Nuclei	Adipose
23	chr11:58294400-58301000	Strong transcription	Liver	Liver
24	chr11:58294600-58314000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr11:58294800-58302800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:58295200-58303400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:58295400-58317400	Weak transcription	Psoas Muscle	Psoas
28	chr11:58295800-58312200	Weak transcription	Brain Anterior Caudate	brain
29	chr11:58295800-58312800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:58295800-58313600	Weak transcription	Brain Substantia Nigra	brain
31	chr11:58295800-58314600	Weak transcription	Right Ventricle	heart
32	chr11:58296000-58306000	Weak transcription	GM12878-XiMat	blood
33	chr11:58296000-58306600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:58296000-58312800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:58296000-58315800	Weak transcription	HMEC	breast
36	chr11:58296000-58317000	Weak transcription	HSMMtube	muscle
37	chr11:58296000-58317200	Weak transcription	Small Intestine	intestine
38	chr11:58296200-58310200	Weak transcription	HSMM	muscle
39	chr11:58296200-58313800	Weak transcription	Dnd41	blood
40	chr11:58296600-58310400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:58297000-58301000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:58297000-58301200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr11:58297400-58300800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr11:58297800-58301200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:58298200-58300800	Strong transcription	Thymus	Thymus
46	chr11:58298200-58301400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr11:58298200-58306400	Weak transcription	Primary B cells from cord blood	blood
48	chr11:58298200-58312200	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:58298400-58301200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:58298400-58301200	Strong transcription	Fetal Thymus	thymus

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