Variant report

Variant	rs17473544
Chromosome Location	chr11:58156467-58156468
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10896734	0.84[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap]
rs11229350	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11229358	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229359	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229369	0.82[AMR][1000 genomes]
rs11229371	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229385	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11229438	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11229439	0.90[ASN][1000 genomes]
rs11229440	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs11229479	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11229532	0.92[ASN][1000 genomes]
rs11229535	0.83[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11229537	0.92[ASN][1000 genomes]
rs11229544	0.92[ASN][1000 genomes]
rs11494130	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11494131	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12361789	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12361887	0.92[ASN][1000 genomes]
rs12362065	0.83[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.80[EUR][1000 genomes]
rs12363504	0.82[EUR][1000 genomes]
rs12364387	0.84[EUR][1000 genomes]
rs12365107	0.85[GIH][hapmap];0.86[MEX][hapmap]
rs12365551	0.92[ASN][1000 genomes]
rs1944051	0.92[ASN][1000 genomes]
rs2096558	0.81[GIH][hapmap];0.86[MEX][hapmap]
rs3829218	0.84[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.93[TSI][hapmap];0.95[ASN][1000 genomes]
rs4127347	0.82[EUR][1000 genomes]
rs4482047	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57106977	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57922517	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58085299	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60998298	0.95[ASN][1000 genomes]
rs7111679	0.85[GIH][hapmap];0.86[MEX][hapmap]
rs7112350	0.95[ASN][1000 genomes]
rs734777	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73481989	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73484144	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7481388	0.92[ASN][1000 genomes]
rs7482383	0.92[ASN][1000 genomes]
rs7484263	0.88[ASN][1000 genomes]
rs7945889	0.92[ASN][1000 genomes]
rs948562	0.84[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[TSI][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1037213	chr11:58142913-58178810	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58155800-58160000	Weak transcription	HSMMtube	muscle
2	chr11:58156400-58159000	Weak transcription	Muscle Satellite Cultured Cells	--

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