Variant report
| Variant | rs11229385 |
|---|---|
| Chromosome Location | chr11:58138894-58138895 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| OR5B1P | TF binding region |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11229350 | 0.85[EUR][1000 genomes] |
| rs11229358 | 0.85[EUR][1000 genomes] |
| rs11229359 | 0.85[EUR][1000 genomes] |
| rs11229371 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11229438 | 0.81[EUR][1000 genomes] |
| rs11494130 | 0.85[EUR][1000 genomes] |
| rs11494131 | 0.84[EUR][1000 genomes] |
| rs12288500 | 0.83[EUR][1000 genomes] |
| rs12289961 | 0.83[EUR][1000 genomes] |
| rs12295189 | 0.84[EUR][1000 genomes] |
| rs12295247 | 0.83[EUR][1000 genomes] |
| rs12361789 | 0.85[EUR][1000 genomes] |
| rs12364387 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12365107 | 0.82[EUR][1000 genomes] |
| rs17473544 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2096558 | 0.82[EUR][1000 genomes] |
| rs4387363 | 0.83[EUR][1000 genomes] |
| rs4482047 | 0.84[EUR][1000 genomes] |
| rs4509786 | 0.84[EUR][1000 genomes] |
| rs55983896 | 0.84[EUR][1000 genomes] |
| rs57106977 | 0.84[EUR][1000 genomes] |
| rs57922517 | 0.86[EUR][1000 genomes] |
| rs58085299 | 0.85[EUR][1000 genomes] |
| rs7111679 | 0.82[EUR][1000 genomes] |
| rs7128629 | 0.81[EUR][1000 genomes] |
| rs734777 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs73481989 | 0.84[EUR][1000 genomes] |
| rs73484144 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv517849 | chr11:58129053-58264181 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042491 | chr11:58134936-58263639 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
