Variant report

Variant	rs2096558
Chromosome Location	chr11:58054187-58054188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10896734	0.92[JPT][hapmap];0.85[TSI][hapmap]
rs11229350	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229358	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229359	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11229385	0.82[EUR][1000 genomes]
rs11229438	0.81[GIH][hapmap]
rs11229440	0.81[GIH][hapmap];0.86[MEX][hapmap]
rs11494130	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11494131	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12270110	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12288500	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12289961	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12295189	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12295247	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12361789	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12362065	0.84[CEU][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs12363504	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12364387	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12365107	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4127347	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4387363	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4482047	0.84[AMR][1000 genomes]
rs4509786	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55983896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57106977	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57922517	0.84[AMR][1000 genomes]
rs58085299	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7107808	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111679	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128629	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73481989	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73484144	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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