Variant report
| Variant | rs10896734 |
|---|---|
| Chromosome Location | chr11:58036405-58036406 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11229301 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11229350 | 0.82[ASN][1000 genomes] |
| rs11229358 | 0.84[ASN][1000 genomes] |
| rs11229359 | 0.84[ASN][1000 genomes] |
| rs11229362 | 0.82[ASN][1000 genomes] |
| rs11229438 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.82[JPT][hapmap] |
| rs11229440 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap] |
| rs11494130 | 0.85[ASN][1000 genomes] |
| rs11494131 | 0.85[ASN][1000 genomes] |
| rs12361789 | 0.85[ASN][1000 genomes] |
| rs12362065 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs12363504 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12365107 | 0.83[ASW][hapmap];0.92[JPT][hapmap];0.85[TSI][hapmap] |
| rs2096558 | 0.92[JPT][hapmap];0.85[TSI][hapmap] |
| rs4127347 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4482047 | 0.82[ASN][1000 genomes] |
| rs57106977 | 0.82[ASN][1000 genomes] |
| rs57922517 | 0.80[ASN][1000 genomes] |
| rs58085299 | 0.85[ASN][1000 genomes] |
| rs7111679 | 0.92[JPT][hapmap];0.85[TSI][hapmap] |
| rs73481989 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv897589 | chr11:57623815-58052357 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039453 | chr11:57924680-58119650 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 4 | nsv541051 | chr11:57924680-58119650 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10896734 | OR8H1 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
