Variant report

Variant	rs12362065
Chromosome Location	chr11:58055199-58055200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10896734	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap]
rs11229301	0.91[ASN][1000 genomes]
rs11229350	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11229358	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11229359	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11229362	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11229371	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11229438	0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap]
rs11229440	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap]
rs11494130	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11494131	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12288500	0.87[EUR][1000 genomes]
rs12289961	0.87[EUR][1000 genomes]
rs12295189	0.88[EUR][1000 genomes]
rs12295247	0.87[EUR][1000 genomes]
rs12361789	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12363504	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365107	0.84[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs17473544	0.80[EUR][1000 genomes]
rs2096558	0.84[CEU][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes]
rs4127347	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4387363	0.87[EUR][1000 genomes]
rs4482047	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4509786	0.87[EUR][1000 genomes]
rs55983896	0.88[EUR][1000 genomes]
rs57106977	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57922517	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58085299	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7107808	0.87[EUR][1000 genomes]
rs7111679	0.84[CEU][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes]
rs7128629	0.88[EUR][1000 genomes]
rs734777	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73481989	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73484144	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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