Variant report

Variant	rs7128629
Chromosome Location	chr11:58052734-58052735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11229350	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229358	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229359	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229385	0.81[EUR][1000 genomes]
rs11494130	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11494131	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12270110	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288500	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12289961	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12295189	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12295247	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12361789	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12362065	0.88[EUR][1000 genomes]
rs12363504	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12364387	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12365107	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096558	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4127347	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4387363	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4482047	0.82[AMR][1000 genomes]
rs4509786	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55983896	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57106977	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs57922517	0.82[AMR][1000 genomes]
rs58085299	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7107808	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111679	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73481989	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58044600-58059600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58052200-58053800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:58052600-58053400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:58052600-58053400	Enhancers	Left Ventricle	heart
5	chr11:58052600-58053800	Enhancers	Rectal Mucosa Donor 31	rectum

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