Variant report

Variant	rs57922517
Chromosome Location	chr11:58101526-58101527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11229350	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11229358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11229359	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11229362	0.99[ASN][1000 genomes]
rs11229369	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11229371	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11229385	0.86[EUR][1000 genomes]
rs11229438	0.86[EUR][1000 genomes]
rs11229479	0.84[EUR][1000 genomes]
rs11494130	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11494131	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12288500	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12289961	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12295189	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12295247	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12361789	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12362065	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12363504	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12364387	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12365107	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17473544	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2096558	0.84[AMR][1000 genomes]
rs4127347	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4387363	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4482047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4509786	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55983896	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57106977	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58085299	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7107808	0.81[AMR][1000 genomes]
rs7111679	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7128629	0.82[AMR][1000 genomes]
rs734777	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73481989	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73484144	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58084200-58102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:58098800-58101600	Weak transcription	NH-A	brain
3	chr11:58098800-58102200	Weak transcription	NHLF	lung
4	chr11:58099000-58101600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:58099000-58101600	Weak transcription	Osteobl	bone
6	chr11:58099000-58102000	Weak transcription	HSMM	muscle
7	chr11:58101400-58102000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:58101400-58102000	Enhancers	HUVEC	blood vessel
9	chr11:58101400-58102400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links