Variant report

Variant	rs11229369
Chromosome Location	chr11:58108512-58108513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11229350	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11229358	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229359	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11229362	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11229371	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11229439	0.88[EUR][1000 genomes]
rs11494130	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11494131	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12361789	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12362065	1.00[YRI][hapmap]
rs17473544	0.82[AMR][1000 genomes]
rs4482047	0.87[ASN][1000 genomes]
rs57106977	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57922517	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58085299	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs734777	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73481989	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73484144	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58103000-58112800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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