Variant report

Variant	rs3842887
Chromosome Location	chr1:180110699-180110700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:180104470..180106814-chr1:180110099..180112797,3	K562	blood:
2	chr1:180106112..180112838-chr1:180122179..180128333,6	MCF-7	breast:
3	chr1:180109932..180112525-chr1:180121644..180123894,2	MCF-7	breast:
4	chr1:180103740..180108161-chr1:180108399..180112441,6	K562	blood:

Variant related genes	Relation type
ENSG00000116260	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16855311	0.83[AFR][1000 genomes]
rs57875912	0.88[AFR][1000 genomes]
rs58605404	0.88[AFR][1000 genomes]
rs59265893	0.88[AFR][1000 genomes]
rs59508309	0.88[AFR][1000 genomes]
rs60065834	0.88[AFR][1000 genomes]
rs60495007	0.88[AFR][1000 genomes]
rs60594364	0.88[AFR][1000 genomes]
rs61371401	0.80[AFR][1000 genomes]
rs61554984	0.88[AFR][1000 genomes]
rs73032356	0.80[AFR][1000 genomes]
rs73032361	0.88[AFR][1000 genomes]
rs73032364	0.88[AFR][1000 genomes]
rs73032365	0.88[AFR][1000 genomes]
rs73032367	0.88[AFR][1000 genomes]
rs73032369	0.88[AFR][1000 genomes]
rs73032376	0.88[AFR][1000 genomes]
rs73032384	0.88[AFR][1000 genomes]
rs73032387	0.88[AFR][1000 genomes]
rs73032389	0.88[AFR][1000 genomes]
rs73032395	0.88[AFR][1000 genomes]
rs73032399	0.88[AFR][1000 genomes]
rs73034469	0.88[AFR][1000 genomes]
rs73034472	0.88[AFR][1000 genomes]
rs73034474	0.88[AFR][1000 genomes]
rs73034477	0.82[AFR][1000 genomes]
rs73034478	0.88[AFR][1000 genomes]
rs73034489	0.88[AFR][1000 genomes]
rs73034495	0.88[AFR][1000 genomes]
rs73036405	0.88[AFR][1000 genomes]
rs73036409	0.88[AFR][1000 genomes]
rs73036413	0.81[AFR][1000 genomes]
rs73036425	0.88[AFR][1000 genomes]
rs73036432	0.88[AFR][1000 genomes]
rs73036436	0.88[AFR][1000 genomes]
rs73036437	0.88[AFR][1000 genomes]
rs73036439	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036444	1.00[AMR][1000 genomes]
rs73036463	0.83[AFR][1000 genomes]
rs73036466	1.00[AFR][1000 genomes]
rs73039980	0.81[AFR][1000 genomes]
rs73039985	0.81[AFR][1000 genomes]
rs73039997	0.88[AFR][1000 genomes]
rs73041713	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429936	chr1:179790343-180214343	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1003739	chr1:180027760-180483292	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv535217	chr1:180027760-180483292	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1012558	chr1:180027960-180217613	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv535218	chr1:180027960-180217613	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	nsv497930	chr1:180031321-180220723	Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv533073	chr1:180031328-180217612	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv916937	chr1:180031328-180220685	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180105800-180110800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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