Variant report

Variant	rs73032361
Chromosome Location	chr1:179951749-179951750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179846821..179849157-chr1:179951247..179953699,2	MCF-7	breast:
2	chr1:179951533..179953327-chr1:179955760..179958027,2	K562	blood:
3	chr1:179944177..179947056-chr1:179949748..179951797,3	K562	blood:
4	chr1:179947029..179952263-chr1:179955680..179959791,6	MCF-7	breast:
5	chr1:179851415..179853315-chr1:179949997..179952166,2	K562	blood:
6	chr1:179949372..179951758-chr1:179955024..179957989,3	K562	blood:
7	chr1:179928179..179930214-chr1:179950625..179952274,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272906	Chromatin interaction
ENSG00000143337	Chromatin interaction
ENSG00000169905	Chromatin interaction
ENSG00000135837	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs3842887	0.88[AFR][1000 genomes]
rs57875912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58605404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59265893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59508309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60065834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60495007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60594364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61371401	0.84[AFR][1000 genomes]
rs61554984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032356	0.84[AFR][1000 genomes]
rs73032364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73032399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034477	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036413	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036436	1.00[AFR][1000 genomes]
rs73036437	1.00[AFR][1000 genomes]
rs73036439	0.96[AFR][1000 genomes]
rs73036466	0.88[AFR][1000 genomes]
rs73039980	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73039985	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73039997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429936	chr1:179790343-180214343	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv1815608	chr1:179813499-180067988	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv429958	chr1:179814306-179994628	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv872573	chr1:179929388-180093066	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv466228	chr1:179944901-180067988	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv548340	chr1:179944901-180067988	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv520322	chr1:179944901-180071987	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv548341	chr1:179945390-180067914	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv520278	chr1:179945390-180093066	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179924800-179963600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:179926800-179961400	Weak transcription	A549	lung
3	chr1:179927000-179965600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:179936400-179955600	Weak transcription	Dnd41	blood
5	chr1:179936600-179958800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:179938000-179983200	Weak transcription	Brain Germinal Matrix	brain
7	chr1:179938600-179954600	Weak transcription	Fetal Thymus	thymus
8	chr1:179938600-179956400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:179938600-179956800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:179938600-179956800	Weak transcription	Fetal Intestine Small	intestine
11	chr1:179938600-179956800	Weak transcription	Fetal Stomach	stomach
12	chr1:179938600-179957600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:179938600-179959000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:179938600-179965800	Weak transcription	Esophagus	oesophagus
15	chr1:179938600-179975800	Weak transcription	Thymus	Thymus
16	chr1:179938600-179983200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:179938600-179984600	Weak transcription	Lung	lung
18	chr1:179938800-179953400	Weak transcription	Fetal Intestine Large	intestine
19	chr1:179938800-179959800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:179939000-179954800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr1:179939000-179989000	Weak transcription	Gastric	stomach
22	chr1:179939600-179955600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:179939800-179956800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:179939800-179959400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr1:179939800-179974800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr1:179940000-179953400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr1:179940000-179961200	Weak transcription	HSMM	muscle
28	chr1:179940800-179956800	Weak transcription	Left Ventricle	heart
29	chr1:179941000-179959000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:179941200-179957200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:179941400-180031800	Weak transcription	Spleen	Spleen
32	chr1:179943000-179956800	Weak transcription	Primary B cells from cord blood	blood
33	chr1:179943200-179955600	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr1:179943400-179956200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr1:179944200-179953400	Weak transcription	Ovary	ovary
36	chr1:179945400-179954400	Weak transcription	Primary T cells from cord blood	blood
37	chr1:179946400-179956800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:179946400-179956800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr1:179946400-179957200	Weak transcription	Pancreas	Pancrea
40	chr1:179946400-179958800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:179946400-179959000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:179946400-179959000	Weak transcription	Right Ventricle	heart
43	chr1:179946400-179959200	Weak transcription	Osteobl	bone
44	chr1:179946400-179963200	Weak transcription	HUVEC	blood vessel
45	chr1:179946400-179965600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:179946400-179972800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:179946400-179983000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr1:179946400-179989200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:179946600-179956200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:179946600-179956800	Weak transcription	Liver	Liver

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