Variant report

Variant	rs3843410
Chromosome Location	chr4:149088585-149088586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11099680	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11099681	0.86[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13137823	1.00[YRI][hapmap]
rs2272089	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3843411	0.83[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3857079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4835491	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835493	0.82[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6535590	0.80[CHB][hapmap]
rs6535594	0.80[CHB][hapmap]
rs6828665	0.80[CHB][hapmap]
rs6844155	0.83[CEU][hapmap];0.92[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6846591	0.81[CHB][hapmap]
rs7694064	0.86[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7694200	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7694706	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
4	chr4:149076000-149094600	Weak transcription	Fetal Stomach	stomach
5	chr4:149083000-149088600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:149084000-149092200	Weak transcription	Gastric	stomach
7	chr4:149084000-149094400	Weak transcription	Pancreas	Pancrea
8	chr4:149084000-149106200	Weak transcription	Lung	lung
9	chr4:149085200-149092000	Weak transcription	HMEC	breast
10	chr4:149085200-149092400	Weak transcription	Fetal Heart	heart
11	chr4:149085400-149091200	Weak transcription	NHEK	skin
12	chr4:149085400-149092800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:149086000-149091400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:149086200-149091000	Weak transcription	Fetal Intestine Small	intestine
15	chr4:149086200-149091600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:149086200-149091600	Weak transcription	Fetal Intestine Large	intestine
17	chr4:149086200-149092200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:149086200-149092600	Weak transcription	Small Intestine	intestine
19	chr4:149086200-149095000	Weak transcription	Stomach Mucosa	stomach
20	chr4:149087400-149089200	Enhancers	Psoas Muscle	Psoas
21	chr4:149087400-149091000	Enhancers	Ovary	ovary
22	chr4:149087600-149089000	Weak transcription	Aorta	Aorta
23	chr4:149087600-149089200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:149087600-149091200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:149087600-149092200	Weak transcription	Esophagus	oesophagus
26	chr4:149087600-149092200	Weak transcription	Left Ventricle	heart
27	chr4:149087600-149092600	Weak transcription	Colonic Mucosa	Colon
28	chr4:149087600-149093400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:149087600-149094200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:149088000-149088600	Genic enhancers	HSMM	muscle
32	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
33	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr4:149088200-149088600	Enhancers	Fetal Kidney	kidney
35	chr4:149088400-149091800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain

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