Variant report

Variant	rs3843411
Chromosome Location	chr4:149096189-149096190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11099680	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11099681	0.95[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11099682	0.84[ASN][1000 genomes]
rs13103165	0.82[ASN][1000 genomes]
rs2356393	0.85[ASN][1000 genomes]
rs3843410	0.83[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3843413	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs3846304	0.81[ASN][1000 genomes]
rs3846305	0.81[ASN][1000 genomes]
rs3857079	0.87[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs3910052	0.81[CEU][hapmap];0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs3910054	0.84[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs3910056	0.82[ASN][1000 genomes]
rs3910057	0.85[CEU][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs4122852	0.86[ASN][1000 genomes]
rs4835491	0.92[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4835493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835495	0.83[ASN][1000 genomes]
rs4835496	0.84[ASN][1000 genomes]
rs4835500	0.82[ASN][1000 genomes]
rs4835503	0.82[CEU][hapmap]
rs4835506	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs6535589	0.82[ASN][1000 genomes]
rs6535590	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs6535593	0.82[CEU][hapmap]
rs6535594	0.82[CHB][hapmap]
rs6828665	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs6846591	0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap]
rs7656855	0.81[ASN][1000 genomes]
rs7673644	0.81[CEU][hapmap];0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs7694064	0.80[CHB][hapmap]
rs7694200	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:149068000-149097400	Weak transcription	Spleen	Spleen
3	chr4:149084000-149106200	Weak transcription	Lung	lung
4	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:149088000-149113200	Weak transcription	Adipose Nuclei	Adipose
6	chr4:149088000-149113600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149088400-149113000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
9	chr4:149092400-149113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:149093000-149102000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:149093000-149102000	Weak transcription	Left Ventricle	heart
12	chr4:149094400-149113200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:149094600-149096200	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:149094600-149099800	Weak transcription	Small Intestine	intestine
15	chr4:149094800-149113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
17	chr4:149095000-149096600	Enhancers	Brain Substantia Nigra	brain
18	chr4:149095000-149101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:149095200-149098600	Weak transcription	Brain Anterior Caudate	brain
20	chr4:149095200-149113600	Weak transcription	Pancreas	Pancrea
21	chr4:149095800-149102000	Weak transcription	Psoas Muscle	Psoas
22	chr4:149096000-149098600	Weak transcription	Fetal Stomach	stomach
23	chr4:149096000-149102000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:149096000-149102600	Weak transcription	Rectal Mucosa Donor 31	rectum

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