Variant report

Variant	rs7656855
Chromosome Location	chr4:149123328-149123329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149120620..149122902-chr4:149123252..149125690,3	K562	blood:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11099682	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13103165	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2356393	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3843411	0.81[ASN][1000 genomes]
rs3843413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3846304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846305	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910052	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910053	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910054	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910056	0.99[ASN][1000 genomes]
rs3910057	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4122852	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4835495	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4835496	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835500	0.99[ASN][1000 genomes]
rs4835501	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835503	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835505	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535589	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6535590	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535593	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535594	0.95[ASN][1000 genomes]
rs6820751	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6828665	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6841570	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6846591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7670108	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7673644	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
3	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
4	chr4:149105200-149123600	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:149111800-149123400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:149113000-149123400	Weak transcription	Psoas Muscle	Psoas
8	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:149114400-149123400	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:149114400-149123400	Weak transcription	Left Ventricle	heart
11	chr4:149114600-149123400	Weak transcription	Ovary	ovary
12	chr4:149114600-149125000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:149115400-149123600	Weak transcription	Fetal Kidney	kidney
14	chr4:149115400-149123800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:149115600-149123400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:149115600-149123600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:149115600-149123600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:149115600-149124200	Weak transcription	Adipose Nuclei	Adipose
19	chr4:149115600-149125000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr4:149115800-149124600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:149116000-149124800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:149116400-149123600	Weak transcription	Liver	Liver
24	chr4:149117000-149123800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:149117600-149125600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:149119800-149123400	Weak transcription	Pancreas	Pancrea
28	chr4:149122800-149124000	Enhancers	Brain Angular Gyrus	brain
29	chr4:149122800-149126800	Enhancers	Fetal Heart	heart
30	chr4:149123000-149125200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:149123200-149123600	Enhancers	Right Ventricle	heart
32	chr4:149123200-149124000	Enhancers	Right Atrium	heart
33	chr4:149123200-149124200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:149123200-149124800	Enhancers	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links