Variant report

Variant	rs6841570
Chromosome Location	chr4:149114458-149114459
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11099682	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13103165	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2356393	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3843413	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846304	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3846305	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3910052	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3910053	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3910054	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3910056	0.91[ASN][1000 genomes]
rs3910057	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4122852	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4835495	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4835496	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4835500	0.91[ASN][1000 genomes]
rs4835501	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4835503	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835504	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835505	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835506	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535589	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6535590	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535591	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6535593	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535594	0.90[ASN][1000 genomes]
rs6820751	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6828665	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846591	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7656855	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7670108	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7673644	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149087600-149123400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:149088400-149122800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:149094800-149124600	Weak transcription	Aorta	Aorta
4	chr4:149099000-149116600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:149099200-149123600	Weak transcription	Brain Anterior Caudate	brain
6	chr4:149103400-149123200	Weak transcription	Small Intestine	intestine
7	chr4:149105000-149114800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:149105200-149123600	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:149106600-149114800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:149109400-149116600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:149111000-149118600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:149111800-149123400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:149112400-149116800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:149113000-149114600	Weak transcription	Fetal Kidney	kidney
16	chr4:149113000-149114800	Strong transcription	Fetal Muscle Trunk	muscle
17	chr4:149113000-149123400	Weak transcription	Psoas Muscle	Psoas
18	chr4:149113200-149114600	Strong transcription	Lung	lung
19	chr4:149113200-149114600	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:149113200-149115600	Strong transcription	Adipose Nuclei	Adipose
21	chr4:149113200-149115800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:149113200-149115800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr4:149113200-149116000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr4:149113200-149116800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:149113200-149117200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:149113400-149114600	ZNF genes & repeats	Fetal Stomach	stomach
27	chr4:149113400-149114600	Strong transcription	Gastric	stomach
28	chr4:149113400-149115600	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:149113600-149114800	Strong transcription	Pancreas	Pancrea
30	chr4:149113600-149115400	Strong transcription	Rectal Smooth Muscle	rectum
31	chr4:149113600-149116000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr4:149113800-149114600	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr4:149113800-149115400	Strong transcription	Liver	Liver
34	chr4:149113800-149115600	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:149114000-149115400	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr4:149114000-149115400	Strong transcription	Colonic Mucosa	Colon
37	chr4:149114000-149117400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:149114000-149123200	Weak transcription	Right Ventricle	heart
39	chr4:149114200-149114600	Strong transcription	Ovary	ovary
40	chr4:149114200-149114800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr4:149114200-149115600	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:149114200-149116400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:149114200-149123200	Weak transcription	Right Atrium	heart
44	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:149114400-149115600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr4:149114400-149116800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:149114400-149123200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr4:149114400-149123400	Weak transcription	Fetal Muscle Leg	muscle
49	chr4:149114400-149123400	Weak transcription	Left Ventricle	heart

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