Variant report

Variant	rs4835505
Chromosome Location	chr4:149129697-149129698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11099680	0.80[ASN][1000 genomes]
rs11099681	0.80[ASN][1000 genomes]
rs11099682	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13103165	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2356393	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3843413	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3846304	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3846305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910053	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910054	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3910056	0.96[ASN][1000 genomes]
rs3910057	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4122852	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4835495	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835496	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4835500	0.96[ASN][1000 genomes]
rs4835501	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835503	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835504	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535589	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6535590	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6535591	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6535593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6535594	0.97[ASN][1000 genomes]
rs6820751	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6828665	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6841570	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6846591	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656855	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7670108	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673644	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
6	chr4:149124000-149131600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149124000-149133200	Weak transcription	Left Ventricle	heart
8	chr4:149124000-149133400	Weak transcription	Pancreas	Pancrea
9	chr4:149124000-149136400	Weak transcription	Brain Angular Gyrus	brain
10	chr4:149125000-149132800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:149125000-149133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:149125000-149135600	Weak transcription	Ovary	ovary
13	chr4:149125200-149130400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:149125200-149132800	Weak transcription	Aorta	Aorta
15	chr4:149125200-149136000	Weak transcription	Psoas Muscle	Psoas
16	chr4:149125600-149132000	Weak transcription	Colon Smooth Muscle	Colon
17	chr4:149126000-149135600	Weak transcription	Brain Substantia Nigra	brain
18	chr4:149126000-149136600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:149126200-149135400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:149126400-149131200	Weak transcription	Fetal Kidney	kidney
21	chr4:149127000-149135400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:149127200-149132000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:149127200-149132200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:149128400-149130400	Weak transcription	Fetal Heart	heart
25	chr4:149128800-149131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:149129200-149129800	Enhancers	Primary B cells from peripheral blood	blood
27	chr4:149129200-149130000	Enhancers	Spleen	Spleen
28	chr4:149129600-149133400	Weak transcription	Lung	lung

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