Variant report

Variant	rs3846305
Chromosome Location	chr4:149125614-149125615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149120620..149122902-chr4:149123252..149125690,3	K562	blood:
2	chr4:149120620..149122902-chr4:149123483..149125690,2	K562	blood:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11099682	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13103165	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2356393	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3843411	0.81[ASN][1000 genomes]
rs3843413	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3846304	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910053	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910054	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3910056	0.99[ASN][1000 genomes]
rs3910057	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4122852	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4835495	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4835496	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835500	0.99[ASN][1000 genomes]
rs4835501	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835503	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835504	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835506	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535589	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6535590	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535591	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6535593	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535594	0.95[ASN][1000 genomes]
rs6820751	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6828665	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6841570	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6846591	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7656855	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670108	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7673644	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149114200-149131400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:149122800-149126800	Enhancers	Fetal Heart	heart
6	chr4:149123400-149126200	Enhancers	Brain Cingulate Gyrus	brain
7	chr4:149123600-149126000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:149123600-149126400	Enhancers	Fetal Kidney	kidney
9	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
10	chr4:149124000-149131600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:149124000-149133200	Weak transcription	Left Ventricle	heart
12	chr4:149124000-149133400	Weak transcription	Pancreas	Pancrea
13	chr4:149124000-149136400	Weak transcription	Brain Angular Gyrus	brain
14	chr4:149124200-149126400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:149124800-149126000	Enhancers	Adipose Nuclei	Adipose
16	chr4:149124800-149126000	Weak transcription	Fetal Muscle Leg	muscle
17	chr4:149125000-149126200	Enhancers	Liver	Liver
18	chr4:149125000-149126200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr4:149125000-149132800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:149125000-149133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr4:149125000-149135600	Weak transcription	Ovary	ovary
22	chr4:149125200-149125800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:149125200-149126200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:149125200-149126400	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:149125200-149130400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:149125200-149132800	Weak transcription	Aorta	Aorta
27	chr4:149125200-149136000	Weak transcription	Psoas Muscle	Psoas
28	chr4:149125400-149125800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:149125400-149125800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:149125400-149126000	Enhancers	Brain Substantia Nigra	brain
31	chr4:149125600-149126000	Enhancers	Brain Hippocampus Middle	brain
32	chr4:149125600-149127000	Weak transcription	Brain Anterior Caudate	brain
33	chr4:149125600-149127000	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr4:149125600-149127200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr4:149125600-149132000	Weak transcription	Colon Smooth Muscle	Colon

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