Variant report

Variant	rs3845724
Chromosome Location	chr2:169610232-169610233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169605248..169607017-chr2:169608764..169610767,2	K562	blood:
2	chr2:169609648..169612063-chr2:169614401..169616642,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11904804	0.84[ASN][1000 genomes]
rs2390732	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4668104	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4668106	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4668107	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7584086	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3845724	C2orf77	cis	cerebellum	SCAN

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
3	chr2:169579600-169610400	Weak transcription	HepG2	liver
4	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
5	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
8	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:169594000-169611000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:169595000-169610600	Weak transcription	HMEC	breast
16	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
17	chr2:169595200-169622800	Weak transcription	NHEK	skin
18	chr2:169597200-169635800	Weak transcription	Ovary	ovary
19	chr2:169597600-169613600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:169601400-169610600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:169601600-169625800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:169602800-169610400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr2:169604200-169615200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr2:169604400-169615400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr2:169604600-169615800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr2:169604600-169616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:169604800-169627600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr2:169605000-169611400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr2:169605200-169612400	Weak transcription	Right Ventricle	heart
31	chr2:169605600-169615800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr2:169605800-169610400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:169606000-169611800	Weak transcription	Fetal Brain Female	brain
34	chr2:169606000-169623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr2:169606000-169630600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr2:169606000-169630600	Weak transcription	Adipose Nuclei	Adipose
37	chr2:169606200-169612000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr2:169606200-169630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr2:169606600-169610400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:169606600-169630600	Weak transcription	Gastric	stomach
41	chr2:169606600-169632800	Weak transcription	Pancreas	Pancrea
42	chr2:169606800-169610800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr2:169606800-169613200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr2:169607200-169610600	Enhancers	Fetal Heart	heart
45	chr2:169607800-169613400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:169608000-169610800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:169608000-169613000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr2:169608000-169616000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr2:169608000-169622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr2:169608000-169625800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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