Variant report

Variant	rs4668106
Chromosome Location	chr2:169608348-169608349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11904804	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2390732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3845724	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4668104	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668107	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7584086	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
3	chr2:169579600-169610400	Weak transcription	HepG2	liver
4	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
5	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
8	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:169594000-169611000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:169595000-169608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:169595000-169610600	Weak transcription	HMEC	breast
17	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
18	chr2:169595200-169622800	Weak transcription	NHEK	skin
19	chr2:169597200-169608600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr2:169597200-169635800	Weak transcription	Ovary	ovary
21	chr2:169597600-169613600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:169601400-169610600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:169601600-169625800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr2:169602600-169609000	Weak transcription	Lung	lung
26	chr2:169602800-169610400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr2:169604200-169615200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr2:169604400-169615400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr2:169604600-169609200	Enhancers	Fetal Muscle Leg	muscle
30	chr2:169604600-169615800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:169604600-169616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr2:169604800-169627600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr2:169605000-169611400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr2:169605200-169609400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr2:169605200-169612400	Weak transcription	Right Ventricle	heart
36	chr2:169605600-169615800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr2:169605800-169610400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr2:169606000-169611800	Weak transcription	Fetal Brain Female	brain
39	chr2:169606000-169623000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr2:169606000-169630600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr2:169606000-169630600	Weak transcription	Adipose Nuclei	Adipose
42	chr2:169606200-169612000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr2:169606200-169630400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr2:169606400-169608800	Enhancers	Fetal Intestine Small	intestine
45	chr2:169606600-169608600	Weak transcription	Fetal Brain Male	brain
46	chr2:169606600-169610400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr2:169606600-169630600	Weak transcription	Gastric	stomach
48	chr2:169606600-169632800	Weak transcription	Pancreas	Pancrea
49	chr2:169606800-169608600	Enhancers	Pancreatic Islets	Pancreatic Islet
50	chr2:169606800-169610800	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links