Variant report

Variant	rs4668107
Chromosome Location	chr2:169632427-169632428
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:169630763..169636990-chr2:169638094..169645299,10	K562	blood:
2	chr2:169629519..169633434-chr2:169651628..169656188,4	K562	blood:
3	chr2:169631455..169632974-chr2:169701424..169703955,2	K562	blood:

Variant related genes	Relation type
ENSG00000163072	Chromatin interaction
ENSG00000227617	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2390732	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3845724	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4109426	0.84[ASN][1000 genomes]
rs4668104	0.86[ASN][1000 genomes]
rs4668106	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169597200-169635800	Weak transcription	Ovary	ovary
2	chr2:169606600-169632800	Weak transcription	Pancreas	Pancrea
3	chr2:169608200-169633800	Weak transcription	Psoas Muscle	Psoas
4	chr2:169608400-169633600	Weak transcription	Dnd41	blood
5	chr2:169609200-169636400	Weak transcription	Lung	lung
6	chr2:169609400-169633000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:169609600-169634200	Weak transcription	Fetal Brain Male	brain
8	chr2:169610800-169637400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:169611200-169636600	Weak transcription	HepG2	liver
10	chr2:169622200-169641400	Weak transcription	Small Intestine	intestine
11	chr2:169623400-169632600	Weak transcription	Right Ventricle	heart
12	chr2:169623400-169632800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:169624400-169632800	Weak transcription	NHEK	skin
14	chr2:169625400-169633000	Strong transcription	Primary T cells from cord blood	blood
15	chr2:169625600-169635400	Weak transcription	Fetal Stomach	stomach
16	chr2:169626600-169632600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:169626800-169633000	Weak transcription	Primary B cells from cord blood	blood
18	chr2:169626800-169633800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr2:169626800-169641800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:169627800-169636600	Weak transcription	Fetal Kidney	kidney
21	chr2:169628000-169637000	Weak transcription	Hela-S3	cervix
22	chr2:169629400-169633600	Weak transcription	Fetal Intestine Large	intestine
23	chr2:169630000-169632800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:169630800-169632600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:169630800-169633600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:169631000-169633600	Weak transcription	Fetal Thymus	thymus
27	chr2:169631000-169633600	Weak transcription	Left Ventricle	heart
28	chr2:169631000-169634200	Weak transcription	Fetal Brain Female	brain
29	chr2:169631000-169636400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:169631000-169637600	Weak transcription	Brain Germinal Matrix	brain
31	chr2:169631200-169637600	Weak transcription	Fetal Heart	heart
32	chr2:169631400-169632800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr2:169631400-169632800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:169631400-169633000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr2:169631600-169632800	ZNF genes & repeats	K562	blood
36	chr2:169632000-169633000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr2:169632200-169632600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:169632400-169632600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
39	chr2:169632400-169632600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr2:169632400-169632600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
41	chr2:169632400-169632800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
42	chr2:169632400-169632800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr2:169632400-169633000	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr2:169632400-169634200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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