Variant report

Variant	rs3850566
Chromosome Location	chr3:109672282-109672283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58935829..58938056-chr3:109671221..109673388,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258231	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10934004	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920111	0.81[ASN][1000 genomes]
rs11921803	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11924231	0.81[ASN][1000 genomes]
rs11926268	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11928295	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12631286	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12635802	0.98[ASN][1000 genomes]
rs12639076	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1526310	0.81[ASN][1000 genomes]
rs17663892	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17720523	0.87[ASN][1000 genomes]
rs17720662	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28540300	0.98[ASN][1000 genomes]
rs34269140	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3844044	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3844045	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3850565	0.98[ASN][1000 genomes]
rs3915172	0.98[ASN][1000 genomes]
rs3915173	0.98[ASN][1000 genomes]
rs55701405	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55840771	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55848294	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55968628	0.81[ASN][1000 genomes]
rs56100358	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56122872	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56175679	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61733710	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66800491	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66894762	0.98[ASN][1000 genomes]
rs67101148	0.98[ASN][1000 genomes]
rs67243448	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67407655	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6765010	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6786269	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6786456	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6786633	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6791523	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6803300	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6804264	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68095772	0.98[ASN][1000 genomes]
rs72949915	0.94[ASN][1000 genomes]
rs73217653	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73217667	0.94[ASN][1000 genomes]
rs73217683	0.98[ASN][1000 genomes]
rs7649120	0.81[ASN][1000 genomes]
rs9842743	0.98[ASN][1000 genomes]
rs9869678	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1009550	chr3:109577315-109795453	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1839660	chr3:109591203-109678542	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv829666	chr3:109593745-109768652	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2754434	chr3:109604310-109777310	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109671600-109672600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:109671800-109672400	Enhancers	Fetal Heart	heart

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