Variant report

Variant	rs7649120
Chromosome Location	chr3:109582957-109582958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:109581529..109584501-chr3:109598932..109601248,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10934001	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10934004	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs11920111	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921803	0.82[ASN][1000 genomes]
rs11924231	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11926268	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12631286	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12635802	0.82[ASN][1000 genomes]
rs12639076	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1464371	0.90[ASN][1000 genomes]
rs1474208	0.83[ASN][1000 genomes]
rs1526310	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17663892	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17720523	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs17720662	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28540300	0.82[ASN][1000 genomes]
rs34269140	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3844044	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3844045	0.81[ASN][1000 genomes]
rs3850565	0.82[ASN][1000 genomes]
rs3850566	0.81[ASN][1000 genomes]
rs3915172	0.82[ASN][1000 genomes]
rs3915173	0.81[ASN][1000 genomes]
rs55701405	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55840771	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55848294	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55968628	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56100358	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56122872	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56175679	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61733710	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66800491	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66894762	0.82[ASN][1000 genomes]
rs67101148	0.82[ASN][1000 genomes]
rs67243448	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67407655	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6765010	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6779519	0.83[ASN][1000 genomes]
rs6786269	0.82[ASN][1000 genomes]
rs6786456	0.82[ASN][1000 genomes]
rs6786633	0.82[ASN][1000 genomes]
rs6791523	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6803300	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6804264	0.82[ASN][1000 genomes]
rs68095772	0.81[ASN][1000 genomes]
rs72949915	0.86[ASN][1000 genomes]
rs73217653	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73217667	0.86[ASN][1000 genomes]
rs73217683	0.82[ASN][1000 genomes]
rs7609677	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7615400	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9842743	0.82[ASN][1000 genomes]
rs9869678	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1011265	chr3:109474218-109625143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1009550	chr3:109577315-109795453	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109582800-109583200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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