Variant report

Variant	rs1464371
Chromosome Location	chr3:109525140-109525141
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10934001	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11920111	0.90[ASN][1000 genomes]
rs11924231	0.90[ASN][1000 genomes]
rs11926268	0.81[ASN][1000 genomes]
rs1474208	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1526310	0.90[ASN][1000 genomes]
rs17663892	0.83[ASN][1000 genomes]
rs17720523	0.83[ASN][1000 genomes]
rs17720662	0.81[ASN][1000 genomes]
rs55701405	0.87[ASN][1000 genomes]
rs55840771	0.81[ASN][1000 genomes]
rs55848294	0.87[ASN][1000 genomes]
rs55968628	0.87[ASN][1000 genomes]
rs56100358	0.81[ASN][1000 genomes]
rs56122872	0.87[ASN][1000 genomes]
rs61733710	0.82[ASN][1000 genomes]
rs66800491	0.87[ASN][1000 genomes]
rs67407655	0.81[ASN][1000 genomes]
rs6779519	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6791523	0.87[ASN][1000 genomes]
rs6803300	0.81[ASN][1000 genomes]
rs7609677	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7615400	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7649120	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1011265	chr3:109474218-109625143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109522200-109525400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr3:109522800-109525600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:109523000-109525200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:109523000-109525600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:109523000-109528200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:109523000-109528200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr3:109523400-109525200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:109523400-109525200	Enhancers	Dnd41	blood
9	chr3:109523400-109527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:109523800-109528200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:109524000-109525600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:109524600-109525400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:109524600-109525800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr3:109524600-109526000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:109524600-109527000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:109524800-109525800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr3:109524800-109528400	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:109525000-109526400	Enhancers	HMEC	breast
19	chr3:109525000-109526600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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