Variant report

Variant	rs1474208
Chromosome Location	chr3:109524067-109524068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:109521488..109524316-chr3:109526133..109527838,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10934001	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10934004	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs11920111	0.83[ASN][1000 genomes]
rs11924231	0.83[ASN][1000 genomes]
rs11926268	0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs1464371	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1526310	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17663892	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17720523	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs17720662	0.81[CHB][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs55701405	0.81[ASN][1000 genomes]
rs55848294	0.81[ASN][1000 genomes]
rs55968628	0.81[ASN][1000 genomes]
rs56122872	0.81[ASN][1000 genomes]
rs66800491	0.81[ASN][1000 genomes]
rs6779519	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791523	0.81[ASN][1000 genomes]
rs6803300	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7609677	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615400	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7649120	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1011265	chr3:109474218-109625143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109522200-109525400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr3:109522400-109524600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:109522800-109525600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:109523000-109524200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:109523000-109524600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:109523000-109524600	Enhancers	HMEC	breast
7	chr3:109523000-109524800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:109523000-109525200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr3:109523000-109525600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:109523000-109528200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:109523000-109528200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:109523400-109525200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr3:109523400-109525200	Enhancers	Dnd41	blood
14	chr3:109523400-109527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr3:109523800-109524200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:109523800-109524200	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr3:109523800-109528200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr3:109524000-109524200	Enhancers	Primary T cells from cord blood	blood
19	chr3:109524000-109525600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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