Variant report

Variant	rs10934001
Chromosome Location	chr3:109526448-109526449
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:109521488..109524316-chr3:109526133..109527838,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11920111	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11924231	0.83[ASN][1000 genomes]
rs1464371	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1474208	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1526310	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55701405	0.81[ASN][1000 genomes]
rs55848294	0.81[ASN][1000 genomes]
rs55968628	0.81[ASN][1000 genomes]
rs56122872	0.81[ASN][1000 genomes]
rs66800491	0.81[ASN][1000 genomes]
rs6779519	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791523	0.81[ASN][1000 genomes]
rs7609677	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615400	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7649120	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009075	chr3:109462019-109800029	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv591270	chr3:109462400-109793785	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1011265	chr3:109474218-109625143	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109523000-109528200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:109523000-109528200	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:109523400-109527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr3:109523800-109528200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:109524600-109527000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:109524800-109528400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:109525000-109526600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:109525200-109526600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:109525400-109526600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:109525600-109527400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:109525800-109527000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:109525800-109527000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:109526000-109527000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:109526000-109527400	Enhancers	Primary T cells fromperipheralblood	blood
15	chr3:109526000-109527400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:109526000-109527800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:109526200-109528200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr3:109526400-109526800	Weak transcription	HMEC	breast
19	chr3:109526400-109527200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:109526400-109527400	Enhancers	Dnd41	blood

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