Variant report

Variant	rs3855737
Chromosome Location	chr2:73396006-73396007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10048837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10048838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10175626	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10189022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11893547	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11902788	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13386236	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13409784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13415504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17008829	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17008862	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17008864	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2043092	1.00[JPT][hapmap]
rs2288632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3820701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3980782	0.85[AMR][1000 genomes]
rs546576	1.00[JPT][hapmap]
rs7594590	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006801	chr2:73305056-73431711	Weak transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv961793	chr2:73393304-73398753	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73384000-73402600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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