Variant report

Variant	rs3857389
Chromosome Location	chr5:71040227-71040228
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10040641	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10050910	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10054690	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10063728	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1106471	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1183135	1.00[ASN][1000 genomes]
rs35587462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703672	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4704211	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4704226	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61189548	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6453135	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6453136	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6453137	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6887612	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6887801	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6895325	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71037800-71040800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr5:71039000-71040400	Enhancers	Fetal Intestine Small	intestine
3	chr5:71039000-71040400	Enhancers	Lung	lung
4	chr5:71039000-71040600	Enhancers	Small Intestine	intestine
5	chr5:71039000-71040600	Enhancers	Stomach Mucosa	stomach
6	chr5:71039000-71040800	Enhancers	Duodenum Mucosa	Duodenum
7	chr5:71039000-71040800	Enhancers	HepG2	liver
8	chr5:71039200-71040400	Enhancers	Gastric	stomach
9	chr5:71039200-71040400	Enhancers	Ovary	ovary
10	chr5:71039200-71040400	Enhancers	Stomach Smooth Muscle	stomach
11	chr5:71039400-71040400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr5:71039600-71040400	Enhancers	Colonic Mucosa	Colon
13	chr5:71039600-71040600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr5:71039800-71040400	Enhancers	Pancreas	Pancrea
15	chr5:71040000-71040400	Enhancers	Fetal Intestine Large	intestine
16	chr5:71040000-71040600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:71040000-71040600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr5:71040200-71040600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr5:71040200-71040800	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links