Variant report

Variant	rs6895325
Chromosome Location	chr5:71062020-71062021
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:70750157..70752984-chr5:71060951..71063253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145734	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10040641	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10050910	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10054690	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10056139	0.89[CHB][hapmap]
rs10059173	0.84[CHB][hapmap]
rs10059730	0.91[CHB][hapmap]
rs10063728	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1106471	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1183135	0.89[ASN][1000 genomes]
rs16871995	0.93[CHB][hapmap]
rs16876022	0.86[CHB][hapmap]
rs35587462	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3857389	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3903314	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3915457	0.86[CHB][hapmap]
rs41476149	0.86[CHB][hapmap]
rs4235686	0.86[CHB][hapmap]
rs4351125	0.86[CHB][hapmap]
rs4583865	0.86[CHB][hapmap]
rs4703672	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4704211	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4704226	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61189548	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6453135	0.86[EUR][1000 genomes]
rs6453136	0.86[EUR][1000 genomes]
rs6453137	0.87[EUR][1000 genomes]
rs6887612	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6887801	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7715263	0.86[CHB][hapmap]
rs9293660	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830341	chr5:71057105-71221422	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71061600-71064000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:71061600-71065000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:71061800-71065000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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