Variant report

Variant	rs3861804
Chromosome Location	chr13:86247599-86247600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12863042	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1337262	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1337263	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1337264	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1337265	0.89[EUR][1000 genomes]
rs1361053	0.86[ASN][1000 genomes]
rs1415397	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1538065	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1753775	0.81[AFR][1000 genomes]
rs1764947	0.87[AFR][1000 genomes]
rs1764971	0.81[AFR][1000 genomes]
rs1819598	0.92[EUR][1000 genomes]
rs1928136	0.90[EUR][1000 genomes]
rs1953675	0.83[ASN][1000 genomes]
rs1953676	0.83[ASN][1000 genomes]
rs2039657	0.95[ASN][1000 genomes]
rs2039662	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2343054	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2343055	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4996713	0.83[ASN][1000 genomes]
rs6650466	0.96[ASN][1000 genomes]
rs722952	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7322879	0.95[ASN][1000 genomes]
rs7323419	0.89[EUR][1000 genomes]
rs7330336	0.89[EUR][1000 genomes]
rs7491615	0.83[ASN][1000 genomes]
rs7988996	0.83[ASN][1000 genomes]
rs7996126	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9319170	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9319171	0.92[EUR][1000 genomes]
rs9531811	0.89[EUR][1000 genomes]
rs9531812	0.92[EUR][1000 genomes]
rs9531814	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9531815	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9531816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9531817	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9547296	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547297	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9547300	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547301	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547302	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547303	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9547304	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9547306	0.98[ASN][1000 genomes]
rs9547307	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547308	0.95[ASN][1000 genomes]
rs9547310	0.95[ASN][1000 genomes]
rs9547311	0.95[ASN][1000 genomes]
rs9547320	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9602801	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv471162	chr13:85994700-86296819	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv456051	chr13:85994700-86306452	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv562609	chr13:85994700-86306452	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv428608	chr13:86109178-86262577	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv900733	chr13:86192376-86309366	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86240800-86249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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