The 2.0 version of rSNPBase

Variant report

Variant rs3861951
Chromosome Location chr1:173172410-173172411
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173154400-173176200 Weak transcription Aorta Aorta
2 chr1:173160400-173174400 Weak transcription Spleen Spleen
3 chr1:173160600-173176000 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr1:173165000-173173000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr1:173165400-173173200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr1:173166000-173172800 Weak transcription Primary T helper naive cells from peripheral blood blood
7 chr1:173169400-173173400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:173170200-173173200 Flanking Active TSS HUVEC blood vessel
9 chr1:173170400-173173400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr1:173170400-173177000 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr1:173171000-173176400 Flanking Active TSS Dnd41 blood
12 chr1:173171400-173173200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:173171400-173174400 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:173171400-173174600 Weak transcription NHDF-Ad bronchial
15 chr1:173171600-173174600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr1:173171800-173172600 Enhancers iPS-20b Cell Line embryonic stem cell
17 chr1:173171800-173172800 Enhancers iPS-18 Cell Line embryonic stem cell
18 chr1:173171800-173172800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
19 chr1:173171800-173172800 Weak transcription Primary T cells from cord blood blood
20 chr1:173171800-173173000 Enhancers HUES48 Cell Line embryonic stem cell
21 chr1:173171800-173174400 Weak transcription Fetal Stomach stomach
22 chr1:173171800-173175600 Flanking Active TSS Primary hematopoietic stem cells blood
23 chr1:173172000-173172800 Weak transcription Primary T helper cells fromperipheralblood blood
24 chr1:173172000-173173200 Weak transcription Primary B cells from cord blood blood
25 chr1:173172000-173173200 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr1:173172000-173174000 Weak transcription Fetal Lung lung
27 chr1:173172000-173174400 Weak transcription HMEC breast
28 chr1:173172000-173174600 Enhancers Primary T killer naive cells fromperipheralblood blood
29 chr1:173172000-173174600 Weak transcription Fetal Heart heart
30 chr1:173172000-173181200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
31 chr1:173172200-173172600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
32 chr1:173172200-173172800 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr1:173172200-173172800 Active TSS HSMMtube muscle
34 chr1:173172200-173174000 Weak transcription NHEK skin
35 chr1:173172200-173174000 Weak transcription Osteobl bone
36 chr1:173172200-173174200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr1:173172200-173174200 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:173172200-173174400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:173172200-173174400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr1:173172200-173174400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:173172200-173174400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr1:173172200-173174400 Weak transcription Right Atrium heart
43 chr1:173172200-173174400 Active TSS GM12878-XiMat blood
44 chr1:173172200-173174400 Active TSS HepG2 liver
45 chr1:173172200-173174400 Weak transcription NH-A brain
46 chr1:173172200-173174600 Weak transcription Colon Smooth Muscle Colon
47 chr1:173172200-173174600 Weak transcription Ovary ovary
48 chr1:173172400-173172600 Enhancers NHLF lung
49 chr1:173172400-173173000 Active TSS Primary hematopoietic stem cells short term culture blood
50 chr1:173172400-173173400 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015