The 2.0 version of rSNPBase

Variant report

Variant rs10489267
Chromosome Location chr1:173170152-173170153
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173154400-173176200 Weak transcription Aorta Aorta
2 chr1:173158800-173170200 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:173160400-173174400 Weak transcription Spleen Spleen
4 chr1:173160600-173171800 Weak transcription NHLF lung
5 chr1:173160600-173176000 Weak transcription Skeletal Muscle Female skeletal muscle
6 chr1:173160800-173171200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
7 chr1:173163200-173171800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:173163400-173171800 Weak transcription Osteobl bone
9 chr1:173165000-173173000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr1:173165200-173171200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr1:173165200-173171200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:173165200-173171800 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:173165400-173173200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr1:173165800-173171200 Weak transcription Primary B cells from peripheral blood blood
15 chr1:173166000-173171200 Weak transcription GM12878-XiMat blood
16 chr1:173166000-173172800 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr1:173168200-173170600 Genic enhancers HSMM muscle
18 chr1:173168400-173170600 Weak transcription HepG2 liver
19 chr1:173168800-173170400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:173169200-173170600 Enhancers Primary hematopoietic stem cells blood
21 chr1:173169400-173171000 Enhancers Dnd41 blood
22 chr1:173169400-173171200 Weak transcription Ovary ovary
23 chr1:173169400-173173400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:173169600-173170200 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:173169600-173170200 Transcr. at gene 5' and 3' HUVEC blood vessel
26 chr1:173169600-173170600 Weak transcription HSMMtube muscle
27 chr1:173169800-173171200 Enhancers Primary B cells from cord blood blood

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Last update: Aug 31, 2015