Variant report

Variant	rs10912564
Chromosome Location	chr1:173170618-173170619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173158069..173160329-chr1:173169696..173171917,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10127495	0.83[EUR][1000 genomes]
rs10157163	0.82[EUR][1000 genomes]
rs10158467	0.82[EUR][1000 genomes]
rs10489267	1.00[JPT][hapmap]
rs10912553	0.81[EUR][1000 genomes]
rs10912554	0.82[EUR][1000 genomes]
rs10912555	0.83[EUR][1000 genomes]
rs11811856	0.95[CEU][hapmap];0.98[ASN][1000 genomes]
rs16845543	0.82[JPT][hapmap]
rs16845558	1.00[JPT][hapmap]
rs16845585	0.82[JPT][hapmap]
rs3861950	0.95[CEU][hapmap];0.90[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4081545	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4090391	0.83[EUR][1000 genomes]
rs4916311	0.83[EUR][1000 genomes]
rs4916312	0.83[EUR][1000 genomes]
rs4916313	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56028318	0.82[EUR][1000 genomes]
rs61826341	0.82[EUR][1000 genomes]
rs6661173	0.82[JPT][hapmap]
rs6665456	0.82[EUR][1000 genomes]
rs6676785	0.86[CEU][hapmap];0.90[CHB][hapmap];0.81[GIH][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs6691738	0.82[EUR][1000 genomes]
rs7514229	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7518045	0.82[JPT][hapmap]
rs7518129	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7521390	0.81[EUR][1000 genomes]
rs7525284	0.95[CEU][hapmap];0.90[CHB][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap];0.91[ASN][1000 genomes]
rs7553711	0.82[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173154400-173176200	Weak transcription	Aorta	Aorta
2	chr1:173160400-173174400	Weak transcription	Spleen	Spleen
3	chr1:173160600-173171800	Weak transcription	NHLF	lung
4	chr1:173160600-173176000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:173160800-173171200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:173163200-173171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:173163400-173171800	Weak transcription	Osteobl	bone
8	chr1:173165000-173173000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:173165200-173171200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:173165200-173171200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:173165200-173171800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr1:173165400-173173200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:173165800-173171200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr1:173166000-173171200	Weak transcription	GM12878-XiMat	blood
15	chr1:173166000-173172800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:173169400-173171000	Enhancers	Dnd41	blood
17	chr1:173169400-173171200	Weak transcription	Ovary	ovary
18	chr1:173169400-173173400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:173169800-173171200	Enhancers	Primary B cells from cord blood	blood
20	chr1:173170200-173171400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr1:173170200-173173200	Flanking Active TSS	HUVEC	blood vessel
22	chr1:173170400-173171400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:173170400-173173400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:173170400-173177000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:173170600-173170800	Enhancers	A549	lung
26	chr1:173170600-173170800	Enhancers	HSMMtube	muscle
27	chr1:173170600-173171400	Flanking Active TSS	Primary hematopoietic stem cells	blood
28	chr1:173170600-173171600	Enhancers	HepG2	liver
29	chr1:173170600-173172200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:173170600-173172400	Transcr. at gene 5' and 3'	HSMM	muscle

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