The 2.0 version of rSNPBase

Variant report

Variant rs11811856
Chromosome Location chr1:173171673-173171674
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:173154400-173176200 Weak transcription Aorta Aorta
2 chr1:173160400-173174400 Weak transcription Spleen Spleen
3 chr1:173160600-173171800 Weak transcription NHLF lung
4 chr1:173160600-173176000 Weak transcription Skeletal Muscle Female skeletal muscle
5 chr1:173163200-173171800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:173163400-173171800 Weak transcription Osteobl bone
7 chr1:173165000-173173000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:173165200-173171800 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:173165400-173173200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr1:173166000-173172800 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr1:173169400-173173400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:173170200-173173200 Flanking Active TSS HUVEC blood vessel
13 chr1:173170400-173173400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr1:173170400-173177000 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:173170600-173172200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr1:173170600-173172400 Transcr. at gene 5' and 3' HSMM muscle
17 chr1:173171000-173176400 Flanking Active TSS Dnd41 blood
18 chr1:173171200-173171800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:173171200-173171800 Weak transcription Primary B cells from cord blood blood
20 chr1:173171200-173171800 Enhancers GM12878-XiMat blood
21 chr1:173171200-173172200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr1:173171200-173172200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:173171200-173172200 Enhancers Ovary ovary
24 chr1:173171200-173172200 Enhancers NHEK skin
25 chr1:173171200-173172400 Enhancers Primary B cells from peripheral blood blood
26 chr1:173171400-173171800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:173171400-173171800 Active TSS Primary hematopoietic stem cells blood
28 chr1:173171400-173172000 Enhancers Fetal Heart heart
29 chr1:173171400-173172000 Enhancers Fetal Lung lung
30 chr1:173171400-173172000 Enhancers A549 lung
31 chr1:173171400-173172200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:173171400-173172400 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
33 chr1:173171400-173173200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr1:173171400-173174400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr1:173171400-173174600 Weak transcription NHDF-Ad bronchial
36 chr1:173171600-173171800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:173171600-173171800 Enhancers Primary T cells from cord blood blood
38 chr1:173171600-173171800 Enhancers Primary T helper cells PMA-I stimulated --
39 chr1:173171600-173171800 Active TSS HSMMtube muscle
40 chr1:173171600-173172200 Flanking Active TSS HepG2 liver
41 chr1:173171600-173172200 Enhancers NH-A brain
42 chr1:173171600-173174600 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015